Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21610 * 120.00246 * 0.02562 * 13 12 2 15 15 C 1.47401 * 119.99715 * 179.97438 * 13 12 2 16 16 C 1.47108 * 128.56618 * 359.67883 * 15 13 12 17 17 N 1.30016 * 105.32523 * 179.87050 * 16 15 13 18 18 O 1.20658 * 112.30694 * 0.42218 * 17 16 15 19 19 C 1.33497 * 113.15168 * 359.71521 * 18 17 16 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 25 25 H 1.07994 * 127.33621 * 359.97438 * 16 15 13 26 26 H 1.08004 * 126.82425 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8582 1.1620 -2.4116 15 6 2.6389 -0.7127 -3.5605 16 6 3.0458 -2.1189 -3.7058 17 7 3.3968 -2.2482 -4.9510 18 8 3.2906 -1.2157 -5.5663 19 6 2.8362 -0.2052 -4.8216 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7089 1.1611 3.4845 24 1 2.2490 -1.6317 -1.1527 25 1 3.0502 -2.8818 -2.9415 26 1 2.6586 0.8094 -5.1463 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259642587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = 19.156003 kcal Electronic energy + Delta-G solvation = -13361.596080 eV Core-core repulsion = 10829.759110 eV Total energy + Delta-G solvation = -2531.836970 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.82245 -38.82111 -34.90670 -33.63946 -32.35253 -31.74638 -28.99546 -25.33004 -24.58421 -22.59276 -20.85391 -19.69209 -18.49743 -17.58549 -17.00525 -15.80390 -15.32940 -14.63150 -14.19221 -14.05709 -13.13281 -13.03539 -12.45253 -11.78357 -11.61486 -11.14682 -11.00649 -10.81195 -10.39624 -10.32406 -10.28270 -9.58466 -9.39173 -9.10664 -8.61329 -8.02643 -6.17173 -4.26853 1.28967 1.89924 3.07502 3.21809 3.28958 3.30973 3.77188 3.90970 4.29620 4.45858 4.49761 5.02506 5.15487 5.51004 5.63331 5.87593 6.76581 6.89965 7.07731 7.33554 7.47467 7.62945 7.84247 8.08387 8.19626 8.54158 8.69759 8.96955 9.40549 10.88889 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.055429 B = 0.007286 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.025775 B = 3842.172604 C = 4177.282497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.696 5.696 13 C 0.579 3.421 14 O -0.550 6.550 15 C -0.245 4.245 16 C 0.018 3.982 17 N -0.362 5.362 18 O 0.087 5.913 19 C 0.007 3.993 20 H 0.092 0.908 21 H 0.015 0.985 22 H 0.027 0.973 23 H 0.265 0.735 24 H 0.389 0.611 25 H 0.200 0.800 26 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 -4.201 -9.774 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.342 5.342 13 C 0.363 3.637 14 O -0.430 6.430 15 C -0.253 4.253 16 C -0.164 4.164 17 N -0.068 5.068 18 O 0.027 5.973 19 C -0.075 4.075 20 H 0.110 0.890 21 H 0.035 0.965 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.222 0.778 25 H 0.217 0.783 26 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.755 -4.230 -10.371 11.534 hybrid contribution 0.075 -0.452 1.618 1.681 sum 2.830 -4.681 -8.753 10.322 Atomic orbital electron populations 1.22090 0.98209 0.99271 1.01064 1.18833 0.91196 0.94094 0.79641 0.93061 1.21190 1.32665 1.13328 0.90222 0.92001 1.24886 0.94758 0.94918 0.99080 1.69900 1.35760 1.22337 1.23990 0.86426 0.79177 0.79268 0.82104 1.20516 1.19825 1.21028 1.46410 1.64135 1.13551 1.10126 1.16919 0.78628 0.86122 0.82037 1.90776 1.52060 1.15214 1.84956 1.22880 1.10910 0.94353 0.97121 1.26512 0.99398 0.96314 0.94223 1.73612 1.19685 1.05452 1.08070 1.84547 1.62244 1.13301 1.37181 1.26326 0.95744 0.95481 0.89990 0.88967 0.96547 0.95356 0.92489 0.77796 0.78305 0.75425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.26 15 2 C 0.26 6.58 2.56 -69.09 -0.18 6.40 15 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 15 4 C -0.54 -13.89 8.73 -34.44 -0.30 -14.19 15 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 15 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 15 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 12 N -0.70 -14.19 5.07 -56.02 -0.28 -14.48 15 13 C 0.58 11.43 7.78 -12.53 -0.10 11.34 15 14 O -0.55 -12.80 16.64 5.27 0.09 -12.71 15 15 C -0.25 -3.75 6.47 -102.89 -0.67 -4.42 15 16 C 0.02 0.24 11.95 -14.72 -0.18 0.06 15 17 N -0.36 -5.01 12.01 31.81 0.38 -4.63 15 18 O 0.09 1.10 11.06 18.64 0.21 1.31 15 19 C 0.01 0.08 12.20 30.41 0.37 0.45 15 20 H 0.09 2.44 6.07 -51.93 -0.32 2.13 15 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 24 H 0.39 6.77 7.90 -40.82 -0.32 6.45 15 25 H 0.20 2.08 7.88 -52.49 -0.41 1.67 15 26 H 0.23 2.11 8.06 -52.48 -0.42 1.69 15 LS Contribution 241.03 15.07 3.63 3.63 Total: -1.00 -30.47 241.03 -3.42 -33.89 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -2.25 Total: 3.46 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.80 Total: -1.94 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.73 Total: -42.91 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.29 Total: -11.40 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.47 -3.42 -33.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.047 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds