Wall clock time and date at job start Mon Mar 30 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21610 * 120.00246 * 0.02562 * 13 12 2 15 15 C 1.47401 * 119.99715 * 179.97438 * 13 12 2 16 16 C 1.47108 * 128.56618 * 359.67883 * 15 13 12 17 17 N 1.30016 * 105.32523 * 179.87050 * 16 15 13 18 18 O 1.20658 * 112.30694 * 0.42218 * 17 16 15 19 19 C 1.33497 * 113.15168 * 359.71521 * 18 17 16 20 20 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 21 21 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 25 25 H 1.07994 * 127.33621 * 359.97438 * 16 15 13 26 26 H 1.08004 * 126.82425 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8582 1.1620 -2.4116 15 6 2.6389 -0.7127 -3.5605 16 6 3.0458 -2.1189 -3.7058 17 7 3.3968 -2.2482 -4.9510 18 8 3.2906 -1.2157 -5.5663 19 6 2.8362 -0.2052 -4.8216 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7089 1.1611 3.4845 24 1 2.2490 -1.6317 -1.1527 25 1 3.0502 -2.8818 -2.9415 26 1 2.6586 0.8094 -5.1463 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259642587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:15 Heat of formation + Delta-G solvation = -2.526142 kcal Electronic energy + Delta-G solvation = -13362.536288 eV Core-core repulsion = 10829.759110 eV Total energy + Delta-G solvation = -2532.777178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.89217 -40.46533 -36.76602 -34.86227 -34.15292 -32.87882 -30.84926 -27.34886 -25.93849 -23.82023 -22.40746 -21.35011 -19.81824 -18.64432 -18.49603 -17.43844 -17.17142 -16.22614 -15.78702 -15.50524 -14.68092 -14.47246 -14.05431 -13.71753 -13.04810 -12.88899 -12.78293 -12.60580 -12.29084 -12.13650 -11.40649 -11.11432 -11.05432 -10.74598 -10.60030 -9.80699 -8.17617 -6.34928 0.15959 0.81844 1.46567 1.47172 1.57533 1.98117 2.28216 2.37251 2.60201 3.13418 3.32524 3.41483 3.89057 4.25811 4.65156 4.75025 4.83851 4.92631 5.08229 5.41502 5.57166 5.66955 5.87542 6.08554 6.71323 6.85508 7.17413 7.29205 7.44934 8.88820 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.055429 B = 0.007286 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.025775 B = 3842.172604 C = 4177.282497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.548 4.548 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.264 1.264 11 H -0.287 1.287 12 N -0.693 5.693 13 C 0.581 3.419 14 O -0.593 6.593 15 C -0.280 4.280 16 C 0.032 3.968 17 N -0.375 5.375 18 O 0.093 5.907 19 C 0.042 3.958 20 H 0.068 0.932 21 H 0.014 0.986 22 H 0.041 0.959 23 H 0.266 0.734 24 H 0.406 0.594 25 H 0.225 0.775 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -5.770 -10.313 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.197 1.197 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.341 5.341 13 C 0.369 3.631 14 O -0.476 6.476 15 C -0.288 4.288 16 C -0.151 4.151 17 N -0.082 5.082 18 O 0.035 5.965 19 C -0.040 4.040 20 H 0.087 0.913 21 H 0.033 0.967 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.241 0.759 25 H 0.241 0.759 26 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.539 -5.839 -10.952 12.906 hybrid contribution -0.154 0.078 1.692 1.701 sum 3.385 -5.761 -9.259 11.419 Atomic orbital electron populations 1.21915 0.98042 0.99624 0.99802 1.18436 0.91310 0.92147 0.81478 0.97795 1.21522 1.32731 1.13649 0.90660 0.90727 1.25777 0.94849 0.95539 1.02265 1.70046 1.36919 1.23825 1.24666 0.85337 0.78969 0.78009 0.77966 1.19697 1.18827 1.21322 1.46111 1.64409 1.14237 1.09333 1.17340 0.77400 0.85636 0.82764 1.90749 1.53881 1.17204 1.85755 1.22416 1.14300 0.95728 0.96355 1.26851 0.97912 0.95799 0.94528 1.73627 1.20508 1.05903 1.08210 1.84570 1.61877 1.13153 1.36853 1.26878 0.92192 0.96186 0.88778 0.91298 0.96680 0.94006 0.92498 0.75885 0.75863 0.72473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.69 9.26 71.98 0.67 -6.03 15 2 C 0.27 13.65 2.56 44.24 0.11 13.76 15 3 H 0.00 0.25 7.58 -2.39 -0.02 0.23 15 4 C -0.55 -28.22 8.73 25.60 0.22 -28.00 15 5 H 0.07 3.57 7.74 -2.91 -0.02 3.54 15 6 C 0.02 0.84 5.30 84.66 0.45 1.29 15 7 N -0.92 -51.55 11.32 21.45 0.24 -51.31 15 8 Si 0.97 41.10 29.54 68.60 2.03 43.13 15 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 15 12 N -0.69 -28.00 5.07 -449.40 -2.28 -30.28 15 13 C 0.58 22.75 7.78 86.66 0.67 23.42 15 14 O -0.59 -27.97 16.64 -4.06 -0.07 -28.03 15 15 C -0.28 -8.06 6.47 -18.74 -0.12 -8.18 15 16 C 0.03 0.76 11.95 87.29 1.04 1.81 15 17 N -0.38 -9.35 12.01 -54.18 -0.65 -10.01 15 18 O 0.09 2.09 11.06 76.95 0.85 2.94 15 19 C 0.04 0.93 12.20 67.61 0.82 1.75 15 20 H 0.07 3.74 6.07 -2.39 -0.01 3.73 15 21 H 0.01 0.70 8.14 -2.38 -0.02 0.68 15 22 H 0.04 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 24 H 0.41 13.53 7.90 -92.70 -0.73 12.79 15 25 H 0.22 3.97 7.88 -2.91 -0.02 3.95 15 26 H 0.26 3.96 8.06 -2.91 -0.02 3.94 15 Total: -1.00 -65.91 241.03 4.48 -61.44 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.48 Total: 12.30 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 3.87 Total: -0.17 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.68 Total: -91.59 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.78 Total: -25.10 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -65.91 4.48 -61.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.909 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds