Wall clock time and date at job start Mon Mar 30 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.36809 * 122.89933 * 359.71126 * 5 2 1 7 7 C 1.34526 * 115.34248 * 179.76553 * 6 5 2 8 8 S 1.75795 * 110.14704 * 0.47753 * 7 6 5 9 9 C 1.38285 * 122.90527 * 179.97438 * 5 2 1 10 10 C 1.39917 * 125.40201 * 0.03922 * 9 5 2 11 11 H 1.07996 * 120.00807 * 359.97438 * 10 9 5 12 12 C 1.40073 * 119.99554 * 179.97438 * 10 9 5 13 13 N 1.30876 * 120.00153 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99982 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47327 * 59.99732 * 14 12 10 16 16 H 1.48498 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46859 * 299.99893 * 14 12 10 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 27 27 H 1.08000 * 122.32307 * 359.97438 * 6 5 2 28 28 H 1.08007 * 124.92933 * 180.22006 * 7 6 5 29 29 H 0.96997 * 119.99733 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.1972 -1.2573 -2.1658 7 6 1.8085 -1.8514 -3.2065 8 16 3.5538 -1.7461 -3.0240 9 6 3.3774 -0.8706 -1.5088 10 6 4.4307 -0.4102 -0.7111 11 1 4.2217 0.1194 0.2066 12 6 5.7564 -0.6364 -1.1028 13 7 6.0098 -1.2778 -2.2150 14 14 7.1627 -0.0224 -0.0375 15 1 7.0744 -0.6466 1.3070 16 1 8.4569 -0.3858 -0.6685 17 1 7.0748 1.4541 0.0956 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 -1.7488 1.2493 25 1 3.1300 -0.7207 1.2495 26 1 1.6766 -0.2073 2.1393 27 1 0.1218 -1.2120 -2.0767 28 1 1.3008 -2.3280 -4.0321 29 1 6.9279 -1.4340 -2.4864 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:56 Heat of formation + Delta-G solvation = -5.727325 kcal Electronic energy + Delta-G solvation = -12188.295267 eV Core-core repulsion = 10201.672489 eV Total energy + Delta-G solvation = -1986.622777 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.73699 -33.97063 -33.19430 -29.17069 -26.25336 -26.23348 -24.88969 -21.77508 -19.19268 -18.12752 -16.68851 -14.99520 -14.60884 -14.04611 -13.27159 -13.11324 -12.49997 -12.23171 -11.89115 -11.77288 -11.35178 -11.30096 -10.91607 -10.84464 -10.70187 -10.50263 -10.24486 -9.91589 -9.71520 -9.43552 -9.15756 -8.60233 -7.27965 -6.90005 -6.53739 -4.39432 2.70323 2.96238 2.99251 3.19037 3.74525 3.79748 4.22681 4.26145 5.09533 5.88005 5.92372 5.99056 6.34623 6.46512 6.55581 6.61554 6.62087 6.76896 6.83564 6.86253 6.89662 7.02950 7.26078 7.36632 7.42801 7.77644 7.95682 8.17660 8.28346 8.68303 8.72634 9.93936 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.015332 C = 0.010825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.270747 B = 1825.781419 C = 2585.997416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.311 4.311 6 C -0.064 4.064 7 C -0.418 4.418 8 S 0.111 5.889 9 C 0.049 3.951 10 C -0.392 4.392 11 H 0.103 0.897 12 C 0.051 3.949 13 N -0.786 5.786 14 Si 0.926 3.074 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.262 1.262 18 H 0.047 0.953 19 H 0.047 0.953 20 H 0.037 0.963 21 H 0.031 0.969 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 2.013 3.498 4.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.027 3.973 3 C -0.197 4.197 4 C -0.197 4.197 5 C -0.318 4.318 6 C -0.093 4.093 7 C -0.552 4.552 8 S 0.372 5.628 9 C -0.071 4.071 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.169 4.169 13 N -0.414 5.414 14 Si 0.750 3.250 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.186 1.186 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.056 0.944 21 H 0.050 0.950 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.152 1.403 2.442 2.821 hybrid contribution -0.694 0.619 1.080 1.425 sum -0.542 2.022 3.522 4.097 Atomic orbital electron populations 1.21842 0.96793 1.00466 0.99748 1.18507 0.92536 0.93421 0.92848 1.21955 1.02629 0.96099 0.99023 1.21957 1.02630 0.99239 0.95890 1.18256 0.91518 1.19854 1.02121 1.19220 0.97458 0.98477 0.94187 1.25318 1.01361 1.21926 1.06624 1.84446 0.99057 1.57732 1.21614 1.21561 0.94713 0.95759 0.95083 1.19309 0.88908 1.28344 1.06216 0.87946 1.26188 1.01230 0.94015 0.95448 1.68909 1.23269 1.29651 1.19537 0.86020 0.78555 0.80208 0.80257 1.18634 1.20032 1.18639 0.93432 0.93425 0.94377 0.95009 0.91254 0.93847 0.93854 0.91254 0.95010 0.89119 0.86852 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.23 37.16 0.27 -2.13 15 2 C 0.03 0.60 0.75 -155.66 -0.12 0.49 15 3 C -0.14 -2.76 8.24 37.16 0.31 -2.46 15 4 C -0.14 -2.77 8.24 37.16 0.31 -2.46 15 5 C -0.31 -7.59 4.69 -105.12 -0.49 -8.09 15 6 C -0.06 -1.56 9.08 -41.41 -0.38 -1.93 15 7 C -0.42 -10.40 11.23 29.42 0.33 -10.07 15 8 S 0.11 2.88 20.27 -107.50 -2.18 0.70 15 9 C 0.05 1.28 5.99 -38.94 -0.23 1.05 15 10 C -0.39 -9.76 7.14 -38.27 -0.27 -10.03 15 11 H 0.10 2.41 4.04 -52.49 -0.21 2.19 15 12 C 0.05 1.21 5.50 -17.27 -0.09 1.11 15 13 N -0.79 -19.34 10.65 55.56 0.59 -18.74 15 14 Si 0.93 17.81 29.56 -169.99 -5.03 12.79 15 15 H -0.26 -4.98 7.11 56.52 0.40 -4.57 15 16 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 18 H 0.05 0.86 7.68 -51.93 -0.40 0.46 15 19 H 0.05 0.86 7.71 -51.93 -0.40 0.46 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.07 1.45 5.25 -51.93 -0.27 1.18 15 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.45 5.25 -51.93 -0.27 1.18 15 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 27 H 0.09 2.02 6.51 -52.49 -0.34 1.68 15 28 H 0.11 2.62 8.06 -52.48 -0.42 2.19 15 29 H 0.29 6.58 8.30 -40.82 -0.34 6.24 15 LS Contribution 243.40 15.07 3.67 3.67 Total: -1.00 -26.29 243.40 -6.89 -33.17 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.57 Total: 2.93 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: -0.38 Total: -34.52 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.59 Total: -18.74 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.18 Total: 0.70 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.29 -6.89 -33.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.447 kcal (2) G-P(sol) polarization free energy of solvation -26.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds