Wall clock time and date at job start Mon Mar 30 2020 02:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.36809 * 122.89933 * 359.71126 * 5 2 1 7 7 C 1.34526 * 115.34248 * 179.76553 * 6 5 2 8 8 S 1.75795 * 110.14704 * 0.47753 * 7 6 5 9 9 C 1.38285 * 122.90527 * 179.97438 * 5 2 1 10 10 C 1.39917 * 125.40201 * 0.03922 * 9 5 2 11 11 H 1.07996 * 120.00807 * 359.97438 * 10 9 5 12 12 C 1.40073 * 119.99554 * 179.97438 * 10 9 5 13 13 N 1.30876 * 120.00153 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99982 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47327 * 59.99732 * 14 12 10 16 16 H 1.48498 * 109.47166 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46859 * 299.99893 * 14 12 10 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 27 27 H 1.08000 * 122.32307 * 359.97438 * 6 5 2 28 28 H 1.08007 * 124.92933 * 180.22006 * 7 6 5 29 29 H 0.96997 * 119.99733 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.1972 -1.2573 -2.1658 7 6 1.8085 -1.8514 -3.2065 8 16 3.5538 -1.7461 -3.0240 9 6 3.3774 -0.8706 -1.5088 10 6 4.4307 -0.4102 -0.7111 11 1 4.2217 0.1194 0.2066 12 6 5.7564 -0.6364 -1.1028 13 7 6.0098 -1.2778 -2.2150 14 14 7.1627 -0.0224 -0.0375 15 1 7.0744 -0.6466 1.3070 16 1 8.4569 -0.3858 -0.6685 17 1 7.0748 1.4541 0.0956 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.6767 1.9563 0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6767 -1.7488 1.2493 25 1 3.1300 -0.7207 1.2495 26 1 1.6766 -0.2073 2.1393 27 1 0.1218 -1.2120 -2.0767 28 1 1.3008 -2.3280 -4.0321 29 1 6.9279 -1.4340 -2.4864 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787395.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:56 Heat of formation + Delta-G solvation = -18.511763 kcal Electronic energy + Delta-G solvation = -12188.849641 eV Core-core repulsion = 10201.672489 eV Total energy + Delta-G solvation = -1987.177152 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.46925 -35.78592 -34.95171 -31.01939 -27.80683 -27.77748 -26.74129 -23.61743 -20.92602 -19.98935 -18.47259 -16.79919 -16.37166 -15.73782 -14.82025 -14.78783 -14.20923 -13.95037 -13.60431 -13.55602 -12.86778 -12.77696 -12.54778 -12.46872 -12.30922 -12.25289 -11.92501 -11.50283 -11.43965 -11.20356 -10.88986 -10.46122 -9.21228 -8.70859 -8.52080 -6.29273 0.89953 1.39253 1.52354 1.56261 1.84636 2.12078 2.34993 2.38202 3.23131 4.32952 4.37623 4.45948 4.84315 4.92314 4.97299 4.98981 5.06554 5.10348 5.11845 5.18367 5.27764 5.39435 5.62261 5.70358 5.80599 5.96155 6.10351 6.31901 6.39739 6.81722 6.83821 8.15597 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.029427 B = 0.015332 C = 0.010825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.270747 B = 1825.781419 C = 2585.997416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.021 3.979 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.323 4.323 6 C -0.070 4.070 7 C -0.437 4.437 8 S 0.071 5.929 9 C 0.024 3.976 10 C -0.408 4.408 11 H 0.114 0.886 12 C 0.010 3.990 13 N -0.812 5.812 14 Si 0.996 3.004 15 H -0.255 1.255 16 H -0.268 1.268 17 H -0.255 1.255 18 H 0.044 0.956 19 H 0.044 0.956 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.111 0.889 28 H 0.124 0.876 29 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 3.026 5.257 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.019 3.981 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.330 4.330 6 C -0.099 4.099 7 C -0.571 4.571 8 S 0.331 5.669 9 C -0.096 4.096 10 C -0.443 4.443 11 H 0.132 0.868 12 C -0.207 4.207 13 N -0.439 5.439 14 Si 0.816 3.184 15 H -0.179 1.179 16 H -0.192 1.192 17 H -0.179 1.179 18 H 0.063 0.937 19 H 0.063 0.937 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.143 2.410 4.191 4.836 hybrid contribution -0.703 0.295 0.517 0.921 sum -0.560 2.705 4.707 5.458 Atomic orbital electron populations 1.21771 0.94747 1.00730 1.01024 1.18657 0.94276 0.93598 0.91553 1.21880 1.01540 0.95671 1.00108 1.21881 1.01541 0.99077 0.96708 1.18758 0.91022 1.19691 1.03482 1.19524 0.98578 0.97886 0.93894 1.25485 1.00774 1.23195 1.07680 1.84422 1.00567 1.58931 1.23013 1.21972 0.96050 0.96439 0.95116 1.19660 0.89495 1.28548 1.06592 0.86808 1.27163 1.03481 0.93599 0.96493 1.68984 1.24339 1.29851 1.20775 0.84973 0.75173 0.79807 0.78463 1.17900 1.19235 1.17909 0.93690 0.93691 0.91569 0.91921 0.92885 0.94694 0.94699 0.92884 0.91922 0.87166 0.85758 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.23 71.98 0.52 -3.72 15 2 C 0.02 0.85 0.75 -52.93 -0.04 0.81 15 3 C -0.13 -5.04 8.24 71.98 0.59 -4.45 15 4 C -0.13 -5.04 8.24 71.98 0.59 -4.45 15 5 C -0.32 -15.67 4.69 -20.19 -0.09 -15.76 15 6 C -0.07 -3.37 9.08 21.08 0.19 -3.18 15 7 C -0.44 -22.01 11.23 66.97 0.75 -21.26 15 8 S 0.07 3.77 20.27 -56.49 -1.14 2.62 15 9 C 0.02 1.27 5.99 22.69 0.14 1.41 15 10 C -0.41 -20.22 7.14 23.12 0.17 -20.05 15 11 H 0.11 5.26 4.04 -2.91 -0.01 5.24 15 12 C 0.01 0.46 5.50 85.28 0.47 0.93 15 13 N -0.81 -40.13 10.65 21.86 0.23 -39.90 15 14 Si 1.00 35.37 29.56 68.60 2.03 37.40 15 15 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 16 H -0.27 -9.12 7.11 99.48 0.71 -8.41 15 17 H -0.26 -8.74 7.11 99.48 0.71 -8.04 15 18 H 0.04 1.52 7.68 -2.39 -0.02 1.50 15 19 H 0.04 1.52 7.71 -2.39 -0.02 1.50 15 20 H 0.07 1.86 8.14 -2.38 -0.02 1.84 15 21 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.05 2.13 5.25 -2.39 -0.01 2.12 15 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 25 H 0.05 2.13 5.25 -2.39 -0.01 2.12 15 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 27 H 0.11 4.79 6.51 -2.91 -0.02 4.77 15 28 H 0.12 5.80 8.06 -2.91 -0.02 5.77 15 29 H 0.30 13.47 8.30 -92.71 -0.77 12.70 15 Total: -1.00 -55.63 243.40 5.54 -50.09 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.14 Total: 19.50 kcal Atomic # 6 Polarization: -73.01 SS G_CDS: 3.29 Total: -69.72 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.23 Total: -39.90 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 2.03 Total: 37.40 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.14 Total: 2.62 kcal Total: -55.63 5.54 -50.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787395.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.581 kcal (2) G-P(sol) polarization free energy of solvation -55.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds