Wall clock time and date at job start Mon Mar 30 2020 02:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35454 * 117.00202 * 2 1 4 4 N 1.32322 * 119.16521 * 0.02562 * 3 2 1 5 5 C 1.32457 * 120.90113 * 179.70715 * 4 3 2 6 6 C 1.38226 * 119.24632 * 0.52585 * 5 4 3 7 7 C 1.50703 * 120.76329 * 179.76400 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.71638 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.39381 * 118.47005 * 359.49052 * 6 5 4 17 17 O 1.35513 * 120.47601 * 180.23312 * 16 6 5 18 18 N 1.32282 * 119.16489 * 179.97438 * 3 2 1 19 19 H 1.08992 * 109.47129 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46976 * 300.00131 * 1 2 3 21 21 H 1.09002 * 109.46828 * 59.99852 * 1 2 3 22 22 H 1.08003 * 120.37262 * 180.26384 * 5 4 3 23 23 H 1.09002 * 109.47152 * 144.71731 * 7 6 5 24 24 H 1.09001 * 109.46980 * 24.71831 * 7 6 5 25 25 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 26 26 H 0.96700 * 114.00132 * 89.99554 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3073 2.3060 0.0005 5 6 1.8726 3.5039 0.0063 6 6 3.2515 3.5999 0.0009 7 6 3.9306 4.9452 0.0019 8 6 4.2678 5.3388 -1.4132 9 1 4.0153 4.6807 -2.2315 10 6 4.8979 6.5394 -1.6633 11 7 5.2049 7.3410 -0.6669 12 14 5.3152 7.0275 -3.4174 13 1 4.0682 7.1027 -4.2204 14 1 5.9845 8.3532 -3.4164 15 1 6.2253 6.0146 -4.0099 16 6 3.9995 2.4237 0.0002 17 8 5.3538 2.4705 -0.0003 18 7 3.3659 1.2568 0.0005 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.2630 4.3954 0.0110 23 1 4.8457 4.8899 0.5915 24 1 3.2627 5.6890 0.4365 25 1 5.6484 8.1855 -0.8429 26 1 5.7472 2.4838 0.8829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925731.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:07 Heat of formation + Delta-G solvation = -27.711157 kcal Electronic energy + Delta-G solvation = -13417.671130 eV Core-core repulsion = 10883.801848 eV Total energy + Delta-G solvation = -2533.869282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.82316 -38.40933 -36.62812 -33.80216 -32.70526 -31.28006 -27.90099 -26.65804 -23.93725 -23.50959 -21.33567 -19.04424 -17.89215 -17.00289 -16.45162 -16.00986 -14.89073 -14.68494 -14.49357 -13.58800 -13.32482 -13.09996 -12.32693 -11.92318 -11.61417 -11.45476 -11.18583 -10.87891 -10.72735 -10.51078 -10.09030 -9.68948 -9.56549 -8.80405 -8.45574 -8.06518 -6.10799 -4.14331 1.39005 1.59093 2.76968 3.30545 3.34280 3.38605 4.05694 4.26472 4.42216 4.59947 5.19870 5.24073 5.30642 5.35290 5.59047 5.60731 5.92769 6.18749 6.58983 7.09700 7.36062 7.45978 7.55732 7.83366 7.91924 8.20366 8.48213 8.87853 9.49727 10.98987 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.049173 B = 0.007928 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.277355 B = 3531.035987 C = 3663.600400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.299 6.299 3 C 0.487 3.513 4 N -0.573 5.573 5 C 0.178 3.822 6 C -0.180 4.180 7 C 0.069 3.931 8 C -0.510 4.510 9 H 0.054 0.946 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.384 3.616 17 O -0.457 6.457 18 N -0.551 5.551 19 H 0.097 0.903 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.174 0.826 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -8.311 3.415 11.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.201 6.201 3 C 0.184 3.816 4 N -0.303 5.303 5 C 0.015 3.985 6 C -0.186 4.186 7 C 0.031 3.969 8 C -0.548 4.548 9 H 0.072 0.928 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.197 3.803 17 O -0.262 6.262 18 N -0.287 5.287 19 H 0.115 0.885 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.191 0.809 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -6.797 -9.295 2.854 11.863 hybrid contribution 0.640 1.157 -0.557 1.434 sum -6.157 -8.139 2.296 10.460 Atomic orbital electron populations 1.22869 0.76371 1.02771 1.02683 1.86009 1.22739 1.23217 1.88154 1.20022 0.84868 0.84666 0.92088 1.67984 1.41361 0.99204 1.21800 1.22794 0.92165 0.93622 0.89912 1.22428 0.95246 0.99844 1.01087 1.18092 0.95471 0.85040 0.98283 1.20918 1.38967 1.03463 0.91478 0.92799 1.24949 0.95434 0.96271 0.97337 1.69923 1.41303 1.11126 1.30906 0.86576 0.78755 0.77655 0.84606 1.20179 1.21163 1.20090 1.18914 0.84881 0.85773 0.90719 1.84807 1.13291 1.94959 1.33177 1.66732 1.08781 1.31745 1.21491 0.88480 0.92183 0.92171 0.80908 0.94665 0.94782 0.92679 0.74176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.36 101.05 1.05 1.62 15 2 O -0.30 -5.03 10.55 -18.05 -0.19 -5.22 15 3 C 0.49 9.38 8.49 -91.28 -0.77 8.60 15 4 N -0.57 -10.52 9.22 -14.80 -0.14 -10.66 15 5 C 0.18 3.32 10.97 -17.29 -0.19 3.13 15 6 C -0.18 -3.77 5.12 -104.20 -0.53 -4.30 15 7 C 0.07 1.66 4.90 -29.03 -0.14 1.51 15 8 C -0.51 -13.87 9.09 -34.44 -0.31 -14.18 15 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 11 N -0.89 -25.41 13.29 55.43 0.74 -24.67 15 12 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 15 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 C 0.38 7.92 7.81 -16.72 -0.13 7.78 15 17 O -0.46 -8.79 12.83 -18.23 -0.23 -9.02 15 18 N -0.55 -11.38 10.49 -14.79 -0.16 -11.54 15 19 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.67 8.09 -51.93 -0.42 0.25 15 21 H 0.06 0.71 8.09 -51.93 -0.42 0.29 15 22 H 0.17 2.80 8.06 -52.48 -0.42 2.38 15 23 H 0.04 0.87 7.78 -51.93 -0.40 0.47 15 24 H 0.03 0.83 8.07 -51.93 -0.42 0.41 15 25 H 0.26 7.12 8.31 -40.82 -0.34 6.79 15 26 H 0.40 5.38 9.06 45.56 0.41 5.79 15 LS Contribution 242.77 15.07 3.66 3.66 Total: -1.00 -31.93 242.77 -4.11 -36.04 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -1.64 Total: -0.66 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.13 Total: 5.77 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.44 Total: -46.87 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.42 Total: -14.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.93 -4.11 -36.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925731.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.331 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds