Wall clock time and date at job start Mon Mar 30 2020 02:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35454 * 117.00202 * 2 1 4 4 N 1.32322 * 119.16521 * 0.02562 * 3 2 1 5 5 C 1.32457 * 120.90113 * 179.70715 * 4 3 2 6 6 C 1.38226 * 119.24632 * 0.52585 * 5 4 3 7 7 C 1.50703 * 120.76329 * 179.76400 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.71638 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.39381 * 118.47005 * 359.49052 * 6 5 4 17 17 O 1.35513 * 120.47601 * 180.23312 * 16 6 5 18 18 N 1.32282 * 119.16489 * 179.97438 * 3 2 1 19 19 H 1.08992 * 109.47129 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46976 * 300.00131 * 1 2 3 21 21 H 1.09002 * 109.46828 * 59.99852 * 1 2 3 22 22 H 1.08003 * 120.37262 * 180.26384 * 5 4 3 23 23 H 1.09002 * 109.47152 * 144.71731 * 7 6 5 24 24 H 1.09001 * 109.46980 * 24.71831 * 7 6 5 25 25 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 26 26 H 0.96700 * 114.00132 * 89.99554 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3073 2.3060 0.0005 5 6 1.8726 3.5039 0.0063 6 6 3.2515 3.5999 0.0009 7 6 3.9306 4.9452 0.0019 8 6 4.2678 5.3388 -1.4132 9 1 4.0153 4.6807 -2.2315 10 6 4.8979 6.5394 -1.6633 11 7 5.2049 7.3410 -0.6669 12 14 5.3152 7.0275 -3.4174 13 1 4.0682 7.1027 -4.2204 14 1 5.9845 8.3532 -3.4164 15 1 6.2253 6.0146 -4.0099 16 6 3.9995 2.4237 0.0002 17 8 5.3538 2.4705 -0.0003 18 7 3.3659 1.2568 0.0005 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.2630 4.3954 0.0110 23 1 4.8457 4.8899 0.5915 24 1 3.2627 5.6890 0.4365 25 1 5.6484 8.1855 -0.8429 26 1 5.7472 2.4838 0.8829 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925731.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:07 Heat of formation + Delta-G solvation = -55.626229 kcal Electronic energy + Delta-G solvation = -13418.881618 eV Core-core repulsion = 10883.801848 eV Total energy + Delta-G solvation = -2535.079770 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.31117 -39.77581 -38.07908 -35.67372 -34.32232 -33.04439 -29.36653 -28.09347 -25.63612 -25.08559 -23.03767 -20.45753 -19.37326 -18.57751 -18.35182 -17.37575 -16.71945 -16.20022 -15.78667 -15.16316 -14.83099 -14.54782 -14.18986 -13.42427 -13.29496 -12.87811 -12.82172 -12.59189 -12.31891 -12.24409 -11.60088 -11.52655 -11.41365 -10.60873 -10.25927 -9.66203 -8.18615 -6.28771 -0.12087 0.05868 1.42266 1.43777 1.45463 1.51647 2.41013 2.61609 2.77016 3.14254 3.24926 3.74654 4.05848 4.28737 4.44370 4.45875 4.71436 4.75012 5.07602 5.36882 5.55594 5.65761 5.76946 6.10371 6.17730 6.60261 6.79384 6.99364 7.38573 8.90237 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.049173 B = 0.007928 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.277355 B = 3531.035987 C = 3663.600400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.487 3.513 4 N -0.565 5.565 5 C 0.191 3.809 6 C -0.204 4.204 7 C 0.081 3.919 8 C -0.525 4.525 9 H 0.042 0.958 10 C 0.016 3.984 11 N -0.922 5.922 12 Si 0.954 3.046 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.277 1.277 16 C 0.386 3.614 17 O -0.471 6.471 18 N -0.572 5.572 19 H 0.135 0.865 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.198 0.802 23 H 0.020 0.980 24 H 0.026 0.974 25 H 0.266 0.734 26 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -8.912 2.954 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.210 6.210 3 C 0.184 3.816 4 N -0.296 5.296 5 C 0.028 3.972 6 C -0.210 4.210 7 C 0.043 3.957 8 C -0.563 4.563 9 H 0.060 0.940 10 C -0.184 4.184 11 N -0.562 5.562 12 Si 0.780 3.220 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.202 1.202 16 C 0.199 3.801 17 O -0.280 6.280 18 N -0.309 5.309 19 H 0.153 0.847 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.215 0.785 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -7.783 -9.921 2.410 12.838 hybrid contribution 0.873 1.237 -0.371 1.559 sum -6.911 -8.684 2.039 11.284 Atomic orbital electron populations 1.23277 0.73646 1.05470 1.03004 1.86039 1.25381 1.22018 1.87514 1.20377 0.84810 0.85667 0.90740 1.68120 1.40648 0.98835 1.22020 1.23140 0.91561 0.94619 0.87890 1.22162 0.96219 0.98443 1.04172 1.17787 0.94881 0.86591 0.96416 1.21198 1.38922 1.03425 0.92743 0.93964 1.25682 0.95389 0.96339 1.00945 1.70011 1.42010 1.11516 1.32651 0.85664 0.78654 0.77405 0.80306 1.19398 1.20381 1.20210 1.18971 0.85225 0.85827 0.90068 1.84731 1.13025 1.94953 1.35322 1.66800 1.09713 1.31567 1.22823 0.84682 0.91540 0.92095 0.78535 0.96172 0.95565 0.92496 0.71631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.36 113.37 1.17 2.02 15 2 O -0.31 -9.72 10.55 -87.51 -0.92 -10.64 15 3 C 0.49 18.03 8.49 180.58 1.53 19.56 15 4 N -0.57 -19.74 9.22 -313.68 -2.89 -22.63 15 5 C 0.19 6.87 10.97 84.60 0.93 7.79 15 6 C -0.20 -8.46 5.12 -19.59 -0.10 -8.56 15 7 C 0.08 3.93 4.90 29.10 0.14 4.07 15 8 C -0.52 -28.60 9.09 25.60 0.23 -28.37 15 9 H 0.04 2.35 7.74 -2.91 -0.02 2.33 15 10 C 0.02 0.85 5.46 84.66 0.46 1.31 15 11 N -0.92 -52.48 13.29 21.45 0.28 -52.20 15 12 Si 0.95 43.39 29.54 68.60 2.03 45.42 15 13 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 16 C 0.39 15.76 7.81 84.82 0.66 16.42 15 17 O -0.47 -18.08 12.83 -88.15 -1.13 -19.21 15 18 N -0.57 -23.13 10.49 -426.37 -4.47 -27.60 15 19 H 0.14 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.07 1.31 8.09 -2.39 -0.02 1.29 15 21 H 0.06 1.27 8.09 -2.39 -0.02 1.25 15 22 H 0.20 5.99 8.06 -2.91 -0.02 5.97 15 23 H 0.02 1.02 7.78 -2.39 -0.02 1.00 15 24 H 0.03 1.28 8.07 -2.39 -0.02 1.26 15 25 H 0.27 14.34 8.31 -92.71 -0.77 13.57 15 26 H 0.42 11.29 9.06 -74.06 -0.67 10.62 15 Total: -1.00 -66.54 242.77 -1.54 -68.07 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 0.54 Total: 4.54 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 5.03 Total: 14.25 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -7.08 Total: -102.43 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -2.06 Total: -29.85 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.54 -1.54 -68.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925731.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.448 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds