Wall clock time and date at job start Mon Mar 30 2020 02:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35645 * 117.00144 * 2 1 4 4 C 1.41355 * 120.26032 * 90.00551 * 3 2 1 5 5 C 1.41157 * 120.28999 * 359.74899 * 4 3 2 6 6 H 1.07995 * 120.00116 * 24.71008 * 5 4 3 7 7 C 1.39935 * 119.99791 * 204.70555 * 5 4 3 8 8 N 1.30867 * 120.00415 * 17.68578 * 7 5 4 9 9 Si 1.86807 * 119.99695 * 197.68111 * 7 5 4 10 10 H 1.48502 * 109.46953 * 60.00615 * 9 7 5 11 11 H 1.48504 * 109.46692 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47125 * 300.00421 * 9 7 5 13 13 C 1.40689 * 119.42308 * 179.72913 * 4 3 2 14 14 C 1.36526 * 119.92545 * 0.02562 * 13 4 3 15 15 C 1.38783 * 120.54229 * 0.02562 * 14 13 4 16 16 C 1.38349 * 120.58726 * 359.95992 * 15 14 13 17 17 C 1.50698 * 119.97249 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.47289 * 270.02018 * 17 16 15 19 19 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46670 * 299.98897 * 1 2 3 21 21 H 1.08997 * 109.47657 * 59.99233 * 1 2 3 22 22 H 0.96997 * 120.00205 * 180.02562 * 8 7 5 23 23 H 1.07990 * 120.04109 * 179.97438 * 13 4 3 24 24 H 1.08004 * 119.73049 * 180.02562 * 14 13 4 25 25 H 1.07993 * 119.70890 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.47128 * 30.02085 * 17 16 15 27 27 H 1.09004 * 109.46907 * 150.01821 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3683 1.8432 1.2209 5 6 2.0486 1.2272 2.4501 6 1 1.9363 0.1545 2.5034 7 6 1.8772 2.0067 3.5996 8 7 1.6677 3.2940 3.4921 9 14 1.9472 1.2095 5.2876 10 1 3.2754 0.5738 5.4800 11 1 1.7368 2.2436 6.3324 12 1 0.8846 0.1774 5.3920 13 6 3.0122 3.0940 1.2004 14 6 3.3179 3.6831 0.0073 15 6 2.9982 3.0585 -1.1901 16 6 2.3653 1.8283 -1.1953 17 6 2.0252 1.1622 -2.5036 18 9 0.7473 1.5598 -2.9110 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.5493 3.8343 4.2889 23 1 3.2635 3.5879 2.1272 24 1 3.8125 4.6431 -0.0048 25 1 3.2459 3.5369 -2.1260 26 1 2.7545 1.4530 -3.2598 27 1 2.0457 0.0798 -2.3764 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259960336.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:24 Heat of formation + Delta-G solvation = -79.777609 kcal Electronic energy + Delta-G solvation = -13782.629287 eV Core-core repulsion = 11226.582272 eV Total energy + Delta-G solvation = -2556.047015 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.96453 -38.48237 -35.87995 -33.91642 -30.73124 -29.38344 -26.47602 -25.10148 -24.83149 -20.81915 -20.24628 -17.24290 -16.35096 -15.74217 -15.30447 -15.00646 -14.65630 -14.24951 -14.05655 -13.44440 -12.91533 -12.66017 -11.90773 -11.51202 -11.36139 -11.13039 -10.91386 -10.62628 -10.53133 -10.36363 -10.00752 -9.63304 -9.25858 -8.65175 -7.55270 -7.40171 -6.86011 -4.42843 2.61446 2.67671 3.02170 3.05131 3.15195 3.86539 4.45554 4.97047 5.44373 5.48602 5.61023 5.68099 6.18559 6.21983 6.29066 6.38976 6.49022 6.51773 6.93851 7.04358 7.16267 7.27808 7.61405 7.81746 7.95414 8.11394 8.34616 8.64684 8.74461 9.06432 10.06714 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.039903 B = 0.011181 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.538112 B = 2503.695954 C = 2995.519766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C -0.015 4.015 4 C 0.098 3.902 5 C -0.445 4.445 6 H 0.085 0.915 7 C 0.074 3.926 8 N -0.790 5.790 9 Si 0.912 3.088 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.264 1.264 13 C -0.148 4.148 14 C -0.108 4.108 15 C -0.214 4.214 16 C -0.122 4.122 17 C 0.113 3.887 18 F -0.223 7.223 19 H 0.071 0.929 20 H 0.043 0.957 21 H 0.033 0.967 22 H 0.283 0.717 23 H 0.122 0.878 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -2.055 -2.911 3.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.246 6.246 3 C -0.060 4.060 4 C 0.095 3.905 5 C -0.474 4.474 6 H 0.103 0.897 7 C -0.145 4.145 8 N -0.414 5.414 9 Si 0.736 3.264 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.189 1.189 13 C -0.167 4.167 14 C -0.127 4.127 15 C -0.234 4.234 16 C -0.123 4.123 17 C 0.058 3.942 18 F -0.204 7.204 19 H 0.089 0.911 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.094 0.906 23 H 0.140 0.860 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.155 -2.008 -2.770 3.425 hybrid contribution -0.296 0.073 0.799 0.855 sum -0.141 -1.936 -1.971 2.766 Atomic orbital electron populations 1.22819 0.82390 1.00655 1.00199 1.85873 1.17941 1.26483 1.94280 1.18398 1.05816 0.90184 0.91583 1.17837 0.89584 0.91332 0.91775 1.19510 1.40598 0.95496 0.91754 0.89683 1.26001 0.92085 0.94619 1.01780 1.69828 1.32802 1.06634 1.32175 0.86297 0.80199 0.79734 0.80151 1.18629 1.20284 1.18868 1.21062 1.01089 0.97645 0.96932 1.20445 1.00705 0.98405 0.93131 1.20108 1.10332 0.96202 0.96728 1.19888 1.03319 0.95982 0.93117 1.20664 0.79684 0.99556 0.94294 1.92724 1.42915 1.92979 1.91799 0.91091 0.93792 0.94834 0.90583 0.85986 0.88928 0.88883 0.91409 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.13 101.05 1.12 1.83 15 2 O -0.33 -7.82 8.76 -18.63 -0.16 -7.98 15 3 C -0.02 -0.38 5.73 -38.34 -0.22 -0.60 15 4 C 0.10 2.62 5.58 -106.68 -0.60 2.02 15 5 C -0.44 -11.76 8.72 -37.84 -0.33 -12.09 15 6 H 0.09 2.23 7.65 -52.49 -0.40 1.83 15 7 C 0.07 1.82 5.14 -17.33 -0.09 1.73 15 8 N -0.79 -19.97 10.96 55.55 0.61 -19.37 15 9 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 15 10 H -0.26 -5.27 7.11 56.52 0.40 -4.86 15 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 13 C -0.15 -3.80 8.64 -39.27 -0.34 -4.14 15 14 C -0.11 -2.52 9.97 -40.00 -0.40 -2.92 15 15 C -0.21 -4.81 9.70 -39.34 -0.38 -5.19 15 16 C -0.12 -2.82 5.61 -104.52 -0.59 -3.40 15 17 C 0.11 2.16 7.45 36.00 0.27 2.43 15 18 F -0.22 -4.54 16.77 2.25 0.04 -4.51 15 19 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.04 0.95 8.14 -51.93 -0.42 0.52 15 21 H 0.03 0.67 7.57 -51.93 -0.39 0.28 15 22 H 0.28 6.51 8.30 -40.82 -0.34 6.17 15 23 H 0.12 3.19 6.16 -52.49 -0.32 2.86 15 24 H 0.09 1.89 8.06 -52.48 -0.42 1.47 15 25 H 0.09 1.84 8.06 -52.49 -0.42 1.41 15 26 H 0.07 1.10 8.09 -51.93 -0.42 0.68 15 27 H 0.08 1.40 7.53 -51.93 -0.39 1.01 15 LS Contribution 242.77 15.07 3.66 3.66 Total: -1.00 -27.72 242.77 -5.19 -32.91 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -2.75 Total: 2.21 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.55 Total: -20.34 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.37 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.16 Total: -7.98 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.04 Total: -4.51 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.72 -5.19 -32.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960336.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.871 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds