Wall clock time and date at job start Mon Mar 30 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35645 * 117.00144 * 2 1 4 4 C 1.41355 * 120.26032 * 90.00551 * 3 2 1 5 5 C 1.41157 * 120.28999 * 359.74899 * 4 3 2 6 6 H 1.07995 * 120.00116 * 24.71008 * 5 4 3 7 7 C 1.39935 * 119.99791 * 204.70555 * 5 4 3 8 8 N 1.30867 * 120.00415 * 17.68578 * 7 5 4 9 9 Si 1.86807 * 119.99695 * 197.68111 * 7 5 4 10 10 H 1.48502 * 109.46953 * 60.00615 * 9 7 5 11 11 H 1.48504 * 109.46692 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47125 * 300.00421 * 9 7 5 13 13 C 1.40689 * 119.42308 * 179.72913 * 4 3 2 14 14 C 1.36526 * 119.92545 * 0.02562 * 13 4 3 15 15 C 1.38783 * 120.54229 * 0.02562 * 14 13 4 16 16 C 1.38349 * 120.58726 * 359.95992 * 15 14 13 17 17 C 1.50698 * 119.97249 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.47289 * 270.02018 * 17 16 15 19 19 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46670 * 299.98897 * 1 2 3 21 21 H 1.08997 * 109.47657 * 59.99233 * 1 2 3 22 22 H 0.96997 * 120.00205 * 180.02562 * 8 7 5 23 23 H 1.07990 * 120.04109 * 179.97438 * 13 4 3 24 24 H 1.08004 * 119.73049 * 180.02562 * 14 13 4 25 25 H 1.07993 * 119.70890 * 179.97438 * 15 14 13 26 26 H 1.09000 * 109.47128 * 30.02085 * 17 16 15 27 27 H 1.09004 * 109.46907 * 150.01821 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3683 1.8432 1.2209 5 6 2.0486 1.2272 2.4501 6 1 1.9363 0.1545 2.5034 7 6 1.8772 2.0067 3.5996 8 7 1.6677 3.2940 3.4921 9 14 1.9472 1.2095 5.2876 10 1 3.2754 0.5738 5.4800 11 1 1.7368 2.2436 6.3324 12 1 0.8846 0.1774 5.3920 13 6 3.0122 3.0940 1.2004 14 6 3.3179 3.6831 0.0073 15 6 2.9982 3.0585 -1.1901 16 6 2.3653 1.8283 -1.1953 17 6 2.0252 1.1622 -2.5036 18 9 0.7473 1.5598 -2.9110 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.5493 3.8343 4.2889 23 1 3.2635 3.5879 2.1272 24 1 3.8125 4.6431 -0.0048 25 1 3.2459 3.5369 -2.1260 26 1 2.7545 1.4530 -3.2598 27 1 2.0457 0.0798 -2.3764 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259960336.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:23 Heat of formation + Delta-G solvation = -95.082422 kcal Electronic energy + Delta-G solvation = -13783.292953 eV Core-core repulsion = 11226.582272 eV Total energy + Delta-G solvation = -2556.710681 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.52466 -40.30684 -37.69985 -35.76358 -32.51733 -31.22591 -28.20872 -26.90280 -26.55627 -22.65605 -22.06074 -19.09859 -18.18027 -17.47215 -16.94140 -16.67646 -16.31489 -15.97190 -15.74138 -15.19289 -14.64636 -14.43126 -13.66184 -13.33616 -13.08190 -12.83271 -12.61000 -12.33916 -12.20197 -11.95301 -11.72879 -11.42471 -11.09205 -10.46047 -9.43618 -9.26616 -8.69761 -6.37827 0.76249 0.86745 1.36271 1.47023 1.51443 2.17774 2.61376 3.17219 3.67942 3.93155 4.03882 4.12877 4.52625 4.57099 4.64168 4.78393 4.79323 4.89877 5.04621 5.20201 5.27783 5.45106 5.76999 5.95121 6.06412 6.24289 6.44190 6.74557 6.83127 7.20118 8.25278 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.039903 B = 0.011181 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.538112 B = 2503.695954 C = 2995.519766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.340 6.340 3 C -0.034 4.034 4 C 0.064 3.936 5 C -0.479 4.479 6 H 0.074 0.926 7 C 0.036 3.964 8 N -0.819 5.819 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.264 1.264 12 H -0.261 1.261 13 C -0.173 4.173 14 C -0.111 4.111 15 C -0.210 4.210 16 C -0.133 4.133 17 C 0.116 3.884 18 F -0.229 7.229 19 H 0.108 0.892 20 H 0.022 0.978 21 H 0.036 0.964 22 H 0.291 0.709 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -2.270 -3.639 4.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.257 6.257 3 C -0.079 4.079 4 C 0.061 3.939 5 C -0.508 4.508 6 H 0.092 0.908 7 C -0.180 4.180 8 N -0.445 5.445 9 Si 0.803 3.197 10 H -0.184 1.184 11 H -0.188 1.188 12 H -0.185 1.185 13 C -0.192 4.192 14 C -0.129 4.129 15 C -0.230 4.230 16 C -0.134 4.134 17 C 0.061 3.939 18 F -0.211 7.211 19 H 0.127 0.873 20 H 0.041 0.959 21 H 0.055 0.945 22 H 0.102 0.898 23 H 0.126 0.874 24 H 0.138 0.862 25 H 0.146 0.854 26 H 0.124 0.876 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.281 -2.218 -3.518 4.168 hybrid contribution -0.344 0.160 0.904 0.981 sum -0.063 -2.057 -2.614 3.327 Atomic orbital electron populations 1.22934 0.80715 1.02872 0.99259 1.85813 1.19489 1.26127 1.94302 1.18707 1.06385 0.90637 0.92140 1.18238 0.90493 0.92328 0.92835 1.19614 1.42882 0.95172 0.93095 0.90816 1.26792 0.91050 0.95030 1.05099 1.69863 1.33193 1.07816 1.33579 0.85245 0.80100 0.78943 0.75423 1.18427 1.18832 1.18505 1.21067 1.02649 0.97997 0.97536 1.20783 1.00095 0.99378 0.92677 1.20561 1.08739 0.95881 0.97779 1.20348 1.02552 0.96259 0.94229 1.20786 0.80068 0.99727 0.93291 1.92711 1.43599 1.93069 1.91674 0.87329 0.95885 0.94522 0.89801 0.87378 0.86193 0.85378 0.87581 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 11.13 113.37 1.26 2.74 15 2 O -0.34 -16.14 8.76 -89.59 -0.78 -16.93 15 3 C -0.03 -1.73 5.73 23.08 0.13 -1.60 15 4 C 0.06 3.51 5.58 -21.20 -0.12 3.39 15 5 C -0.48 -26.15 8.72 23.40 0.20 -25.94 15 6 H 0.07 4.02 7.65 -2.91 -0.02 4.00 15 7 C 0.04 1.81 5.14 85.25 0.44 2.25 15 8 N -0.82 -42.31 10.96 21.83 0.24 -42.07 15 9 Si 0.98 38.13 29.60 68.60 2.03 40.16 15 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 11 H -0.26 -9.56 7.11 99.48 0.71 -8.85 15 12 H -0.26 -9.88 7.11 99.48 0.71 -9.18 15 13 C -0.17 -9.06 8.64 22.47 0.19 -8.87 15 14 C -0.11 -5.05 9.97 22.00 0.22 -4.83 15 15 C -0.21 -8.96 9.70 22.43 0.22 -8.74 15 16 C -0.13 -5.92 5.61 -19.80 -0.11 -6.03 15 17 C 0.12 4.10 7.45 71.24 0.53 4.63 15 18 F -0.23 -8.75 16.77 44.97 0.75 -8.00 15 19 H 0.11 3.48 8.14 -2.38 -0.02 3.46 15 20 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.04 1.43 7.57 -2.39 -0.02 1.41 15 22 H 0.29 13.54 8.30 -92.71 -0.77 12.77 15 23 H 0.11 5.84 6.16 -2.92 -0.02 5.82 15 24 H 0.12 4.67 8.06 -2.91 -0.02 4.64 15 25 H 0.13 4.51 8.06 -2.91 -0.02 4.49 15 26 H 0.11 2.97 8.09 -2.39 -0.02 2.95 15 27 H 0.08 2.87 7.53 -2.38 -0.02 2.85 15 Total: -1.00 -60.07 242.77 6.38 -53.69 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.17 Total: 16.14 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.97 Total: -43.00 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.24 Total: -42.07 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.78 Total: -16.93 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 0.75 Total: -8.00 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -60.07 6.38 -53.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960336.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.392 kcal (2) G-P(sol) polarization free energy of solvation -60.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds