Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48507 * 109.46874 * 269.99532 * 3 2 1 5 5 H 1.48504 * 109.47296 * 29.99343 * 3 2 1 6 6 H 1.48498 * 109.47446 * 149.99760 * 3 2 1 7 7 C 1.37875 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47381 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47568 * 55.00409 * 10 9 7 12 12 N 1.46900 * 109.47170 * 294.99832 * 10 9 7 13 13 C 1.50703 * 109.47230 * 174.99816 * 10 9 7 14 14 C 1.38238 * 119.58717 * 124.99606 * 13 10 9 15 15 C 1.38588 * 119.18753 * 179.70249 * 14 13 10 16 16 C 1.38886 * 118.40029 * 0.27923 * 15 14 13 17 17 F 1.35100 * 120.44340 * 179.97438 * 16 15 14 18 18 C 1.38413 * 119.10961 * 0.02562 * 16 15 14 19 19 N 1.31845 * 119.59079 * 305.25294 * 13 10 9 20 20 H 0.97003 * 120.00206 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46984 * 59.99487 * 9 7 2 22 22 H 1.09001 * 109.47136 * 299.99904 * 9 7 2 23 23 H 1.00900 * 111.00131 * 176.04525 * 12 10 9 24 24 H 1.00896 * 111.00016 * 299.99649 * 12 10 9 25 25 H 1.08002 * 120.40978 * 359.97438 * 14 13 10 26 26 H 1.07999 * 120.80386 * 180.30037 * 15 14 13 27 27 H 1.08002 * 119.63494 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9294 -3.5552 0.8424 12 7 3.0083 -3.6539 -1.2547 13 6 1.4959 -4.9637 0.1244 14 6 1.6877 -5.9542 -0.8205 15 6 0.9990 -7.1503 -0.6951 16 6 0.1331 -7.3045 0.3797 17 9 -0.5594 -8.4531 0.5416 18 6 -0.0117 -6.2650 1.2822 19 7 0.6618 -5.1415 1.1298 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5568 0.8903 23 1 3.7161 -4.3730 -1.2523 24 1 2.3961 -3.7517 -2.0507 25 1 2.3692 -5.7997 -1.6440 26 1 1.1327 -7.9437 -1.4156 27 1 -0.6832 -6.3756 2.1208 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968390.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -13.233791 kcal Electronic energy + Delta-G solvation = -13187.006493 eV Core-core repulsion = 10666.137786 eV Total energy + Delta-G solvation = -2520.868707 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.91421 -40.08093 -35.55039 -32.63072 -32.28644 -29.82052 -28.36701 -24.77529 -23.68706 -22.47239 -20.12932 -17.64858 -17.04788 -16.61931 -15.75694 -15.58674 -15.32773 -14.40520 -14.23804 -13.85039 -13.31881 -13.18493 -12.66141 -12.24352 -11.90860 -11.10372 -10.85508 -10.54439 -10.34037 -9.86772 -9.67132 -9.30647 -9.05567 -8.56196 -8.26243 -8.13166 -5.88250 -3.87177 1.04134 1.19665 3.40848 3.46442 3.50657 3.77828 4.09382 4.52359 4.56445 4.70656 4.82661 4.93362 5.28682 5.49869 5.50232 5.77244 5.88991 5.99654 6.22571 6.69361 6.78694 7.52555 7.68858 7.90737 8.01304 8.12046 8.15687 8.53482 9.18649 9.74338 11.23634 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.061601 B = 0.006936 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.425607 B = 4036.018486 C = 4331.761299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.894 3.106 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.495 4.495 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.141 3.859 11 H 0.094 0.906 12 N -0.818 5.818 13 C 0.110 3.890 14 C -0.163 4.163 15 C -0.105 4.105 16 C 0.021 3.979 17 F -0.138 7.138 18 C 0.082 3.918 19 N -0.441 5.441 20 H 0.258 0.742 21 H 0.012 0.988 22 H 0.036 0.964 23 H 0.323 0.677 24 H 0.338 0.662 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -13.863 -1.215 14.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.149 4.149 3 Si 0.722 3.278 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.029 3.971 11 H 0.112 0.888 12 N -0.346 5.346 13 C -0.030 4.030 14 C -0.184 4.184 15 C -0.131 4.131 16 C -0.001 4.001 17 F -0.117 7.117 18 C -0.077 4.077 19 N -0.149 5.149 20 H 0.067 0.933 21 H 0.031 0.969 22 H 0.054 0.946 23 H 0.135 0.865 24 H 0.152 0.848 25 H 0.158 0.842 26 H 0.159 0.841 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.211 -12.345 -0.403 12.548 hybrid contribution -0.125 -1.085 -0.827 1.370 sum 2.086 -13.431 -1.229 13.647 Atomic orbital electron populations 1.69978 1.06026 1.26338 1.51861 1.25011 0.94791 0.99162 0.95912 0.86572 0.79756 0.83578 0.77884 1.20915 1.21582 1.19957 1.21147 0.93344 0.90042 1.48843 0.91916 1.19117 0.92655 0.90041 0.97919 1.20840 0.94901 0.89053 0.92337 0.88796 1.58854 1.17666 1.54140 1.03954 1.23327 0.92860 0.97751 0.89039 1.21922 1.01684 0.93334 1.01413 1.21548 0.95703 0.98885 0.96995 1.18810 0.97420 0.84695 0.99130 1.91482 1.77529 1.47233 1.95440 1.23033 0.98448 0.88013 0.98247 1.67706 1.05173 1.20343 1.21672 0.93253 0.96950 0.94616 0.86456 0.84829 0.84208 0.84062 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.72 15 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 15 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.50 -13.92 8.84 -34.44 -0.30 -14.23 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.34 15 9 C 0.04 1.03 4.54 -27.89 -0.13 0.90 15 10 C 0.14 2.81 3.17 -68.87 -0.22 2.59 15 11 H 0.09 1.93 8.14 -51.93 -0.42 1.50 15 12 N -0.82 -13.96 8.24 -5.66 -0.05 -14.01 15 13 C 0.11 1.94 6.17 -82.59 -0.51 1.43 15 14 C -0.16 -2.27 9.06 -39.45 -0.36 -2.63 15 15 C -0.10 -1.33 10.16 -39.21 -0.40 -1.73 15 16 C 0.02 0.29 7.35 -39.28 -0.29 0.00 15 17 F -0.14 -1.84 17.28 2.25 0.04 -1.80 15 18 C 0.08 1.25 11.17 -17.47 -0.20 1.06 15 19 N -0.44 -8.14 9.77 -9.42 -0.09 -8.23 15 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 15 22 H 0.04 1.00 7.79 -51.93 -0.40 0.60 15 23 H 0.32 4.35 8.09 -39.29 -0.32 4.03 15 24 H 0.34 5.48 8.27 -39.29 -0.32 5.16 15 25 H 0.14 1.57 6.19 -52.49 -0.33 1.25 15 26 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.16 2.05 8.06 -52.49 -0.42 1.62 15 LS Contribution 244.16 15.07 3.68 3.68 Total: -1.00 -31.45 244.16 -5.81 -37.25 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.60 Total: 3.97 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.50 Total: -11.23 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.60 Total: -48.95 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.45 -5.81 -37.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968390.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds