Wall clock time and date at job start Mon Mar 30 2020 02:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50708 * 120.02715 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47034 * 335.02920 * 9 8 7 11 11 F 1.39899 * 109.47299 * 215.02377 * 9 8 7 12 12 C 1.50701 * 109.47109 * 95.02590 * 9 8 7 13 13 H 1.08009 * 119.99844 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00494 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00210 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 119.99455 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.47195 * 90.00324 * 16 14 12 18 18 H 1.48497 * 109.47188 * 209.99909 * 16 14 12 19 19 H 1.48497 * 109.47396 * 330.00266 * 16 14 12 20 20 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 21 21 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 22 22 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.03081 * 0.04968 * 4 3 2 24 24 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 25 25 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 27 27 H 0.97003 * 120.00032 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0005 10 1 5.2324 0.2260 -0.4337 11 9 3.6030 -0.9585 -0.7560 12 6 4.4242 -0.4664 1.4160 13 1 3.9807 0.0824 2.2337 14 6 5.1461 -1.6139 1.6671 15 7 5.2953 -2.0399 2.9023 16 14 5.9124 -2.5634 0.2527 17 1 7.2840 -2.0534 -0.0005 18 1 5.9773 -4.0053 0.6020 19 1 5.0854 -2.3865 -0.9679 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2128 2.3203 -0.0001 24 1 1.3341 4.5113 -0.0060 25 1 3.7923 4.6380 -0.0014 26 1 5.1344 2.5751 0.0000 27 1 5.8035 -2.8470 3.0790 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:13 Heat of formation + Delta-G solvation = -78.259877 kcal Electronic energy + Delta-G solvation = -13848.148288 eV Core-core repulsion = 11292.167087 eV Total energy + Delta-G solvation = -2555.981201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.09223 -40.87606 -38.20519 -35.06537 -33.13061 -30.93761 -29.33596 -27.95590 -24.94761 -22.96557 -22.00793 -19.21128 -18.88696 -17.36786 -17.20150 -16.54756 -16.39192 -15.82367 -15.41797 -15.03022 -14.81893 -14.53734 -14.21918 -13.49846 -13.17964 -12.93688 -12.60275 -12.44473 -12.31967 -11.89146 -11.73523 -11.28464 -11.01995 -10.85519 -9.70986 -8.96008 -8.41740 -6.57408 0.46014 0.60981 1.31082 1.36361 1.55662 2.31284 2.59247 2.91065 2.94812 3.84362 3.98399 4.17617 4.32522 4.37670 4.42085 4.53491 4.56291 4.71432 4.84052 5.05059 5.13671 5.26608 5.49007 5.61199 5.75948 6.01532 6.12336 6.50273 6.67181 7.16146 8.73324 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.036345 B = 0.011902 C = 0.010506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.217157 B = 2352.066181 C = 2664.434516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.117 3.883 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.159 4.159 7 C -0.087 4.087 8 C -0.155 4.155 9 C 0.226 3.774 10 H 0.053 0.947 11 F -0.235 7.235 12 C -0.547 4.547 13 H 0.036 0.964 14 C 0.028 3.972 15 N -0.933 5.933 16 Si 0.933 3.067 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.236 1.236 20 H 0.061 0.939 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.151 0.849 24 H 0.162 0.838 25 H 0.156 0.844 26 H 0.135 0.865 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.280 9.708 -8.277 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.072 3.928 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.105 4.105 8 C -0.156 4.156 9 C 0.189 3.811 10 H 0.071 0.929 11 F -0.216 7.216 12 C -0.585 4.585 13 H 0.055 0.945 14 C -0.172 4.172 15 N -0.571 5.571 16 Si 0.754 3.246 17 H -0.184 1.184 18 H -0.207 1.207 19 H -0.159 1.159 20 H 0.079 0.921 21 H 0.090 0.910 22 H 0.123 0.877 23 H 0.169 0.831 24 H 0.179 0.821 25 H 0.174 0.826 26 H 0.153 0.847 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.158 9.347 -8.182 14.337 hybrid contribution 0.200 -0.851 0.106 0.881 sum -6.958 8.496 -8.076 13.631 Atomic orbital electron populations 1.23281 0.77477 1.04837 1.02021 1.86315 1.22654 1.27111 1.88171 1.19162 0.91850 0.85459 0.96372 1.21495 1.00866 0.91783 1.09383 1.21335 0.94810 0.97424 0.96656 1.21344 0.94332 0.98304 1.03674 1.21045 1.00842 0.90838 0.97784 1.20059 0.92231 0.96605 1.06705 1.18236 0.90822 0.82367 0.89638 0.92946 1.92713 1.84347 1.65958 1.78591 1.21310 1.34559 1.11146 0.91485 0.94534 1.25867 0.95313 0.97518 0.98497 1.70032 1.41317 1.24312 1.21427 0.86098 0.79318 0.77879 0.81260 1.18434 1.20706 1.15906 0.92076 0.90996 0.87650 0.83133 0.82082 0.82644 0.84701 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.64 15 2 O -0.33 -14.26 8.62 -92.41 -0.80 -15.06 15 3 C 0.12 4.87 6.57 22.50 0.15 5.02 15 4 C -0.22 -6.77 9.04 22.36 0.20 -6.57 15 5 C -0.08 -2.23 10.04 22.25 0.22 -2.01 15 6 C -0.16 -4.50 10.04 22.28 0.22 -4.28 15 7 C -0.09 -3.19 9.68 22.25 0.22 -2.97 15 8 C -0.15 -6.99 4.98 -19.77 -0.10 -7.09 15 9 C 0.23 11.74 2.70 29.10 0.08 11.82 15 10 H 0.05 2.56 7.48 -2.39 -0.02 2.55 15 11 F -0.23 -12.71 12.45 44.97 0.56 -12.15 15 12 C -0.55 -33.38 9.42 25.60 0.24 -33.14 15 13 H 0.04 2.47 7.98 -2.91 -0.02 2.45 15 14 C 0.03 1.71 5.47 84.66 0.46 2.17 15 15 N -0.93 -59.65 13.96 21.45 0.30 -59.35 15 16 Si 0.93 46.15 27.07 68.60 1.86 48.00 15 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 15 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 15 19 H -0.24 -11.56 5.49 99.48 0.55 -11.01 15 20 H 0.06 1.56 7.66 -2.39 -0.02 1.55 15 21 H 0.07 1.66 7.66 -2.39 -0.02 1.64 15 22 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 23 H 0.15 3.66 6.30 -2.91 -0.02 3.64 15 24 H 0.16 2.81 8.06 -2.91 -0.02 2.79 15 25 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 26 H 0.14 4.52 8.06 -2.91 -0.02 4.49 15 27 H 0.27 16.05 8.31 -92.71 -0.77 15.28 15 Total: -1.00 -74.53 237.27 5.73 -68.80 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.00 Total: 5.15 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 2.81 Total: -35.40 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.30 Total: -59.35 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.80 Total: -15.06 kcal Atomic # 9 Polarization: -12.71 SS G_CDS: 0.56 Total: -12.15 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.86 Total: 48.00 kcal Total: -74.53 5.73 -68.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.458 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds