Wall clock time and date at job start Mon Mar 30 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42885 * 1 3 3 C 1.35899 * 117.00542 * 2 1 4 4 C 1.38750 * 120.05251 * 0.24612 * 3 2 1 5 5 C 1.38127 * 119.94399 * 180.32285 * 4 3 2 6 6 C 1.38292 * 120.05594 * 359.68565 * 5 4 3 7 7 C 1.38245 * 120.10747 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05832 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02933 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47607 * 215.00689 * 9 8 7 11 11 F 1.39911 * 109.47093 * 335.00091 * 9 8 7 12 12 C 1.50702 * 109.47465 * 94.99894 * 9 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 H 1.08995 * 109.47810 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47161 * 300.00400 * 1 2 3 22 22 H 1.09008 * 109.47474 * 60.00189 * 1 2 3 23 23 H 1.08004 * 120.03394 * 0.02894 * 4 3 2 24 24 H 1.08000 * 119.97444 * 179.70406 * 5 4 3 25 25 H 1.07995 * 119.94307 * 180.02562 * 6 5 4 26 26 H 1.08001 * 119.97093 * 180.02562 * 7 6 5 27 27 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4288 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3752 0.0052 5 6 1.9209 3.6047 -0.0016 6 6 3.3020 3.6757 -0.0069 7 6 4.0560 2.5169 -0.0060 8 6 3.4311 1.2847 -0.0004 9 6 4.2536 0.0220 0.0000 10 1 3.7445 -0.7435 -0.5855 11 9 5.5078 0.2822 -0.5628 12 6 4.4293 -0.4627 1.4161 13 1 3.9890 0.0883 2.2340 14 6 5.1522 -1.6095 1.6675 15 7 5.6879 -2.2808 0.6715 16 14 5.3764 -2.2061 3.4234 17 1 6.6021 -1.5977 4.0002 18 1 4.1978 -1.8095 4.2352 19 1 5.5075 -3.6852 3.4308 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2128 2.3204 0.0097 24 1 1.3341 4.5114 -0.0024 25 1 3.7923 4.6379 -0.0118 26 1 5.1344 2.5750 -0.0098 27 1 5.5712 -1.9712 -0.2404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:14 Heat of formation + Delta-G solvation = -73.076570 kcal Electronic energy + Delta-G solvation = -13734.508626 eV Core-core repulsion = 11178.752191 eV Total energy + Delta-G solvation = -2555.756436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.97352 -39.59399 -36.84229 -33.16681 -31.25496 -29.64635 -27.10027 -26.30278 -23.16707 -21.58292 -20.64134 -17.70954 -17.09014 -15.89200 -15.45503 -15.25357 -14.19129 -13.98688 -13.75600 -13.65269 -13.40891 -12.82639 -12.22018 -11.85642 -11.46519 -11.29906 -10.91253 -10.76802 -10.71439 -10.47247 -10.10426 -9.55758 -8.81045 -8.50119 -8.18489 -7.55105 -6.41235 -4.23097 1.84128 1.94196 3.43367 3.47139 3.63226 3.76701 4.26889 4.52585 5.14215 5.22744 5.35199 5.37855 5.40658 5.53398 5.69878 5.81225 5.91639 6.20063 6.43906 6.58237 6.67300 6.83163 7.02461 7.28812 7.55952 7.82872 7.96373 8.36696 8.75725 9.55829 10.96586 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.011318 C = 0.009923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.792627 B = 2473.433690 C = 2821.092104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.133 3.867 4 C -0.216 4.216 5 C -0.101 4.101 6 C -0.161 4.161 7 C -0.075 4.075 8 C -0.101 4.101 9 C 0.240 3.760 10 H 0.046 0.954 11 F -0.240 7.240 12 C -0.621 4.621 13 H 0.058 0.942 14 C 0.031 3.969 15 N -0.897 5.897 16 Si 1.077 2.923 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.282 1.282 20 H 0.095 0.905 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 7.749 -0.993 12.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.212 6.212 3 C 0.088 3.912 4 C -0.234 4.234 5 C -0.120 4.120 6 C -0.179 4.179 7 C -0.093 4.093 8 C -0.102 4.102 9 C 0.204 3.796 10 H 0.063 0.937 11 F -0.221 7.221 12 C -0.659 4.659 13 H 0.077 0.923 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.904 3.096 17 H -0.212 1.212 18 H -0.213 1.213 19 H -0.208 1.208 20 H 0.114 0.886 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.139 0.861 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.147 0.853 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.345 6.355 -0.108 10.490 hybrid contribution -0.999 1.495 -0.924 2.022 sum -9.345 7.850 -1.033 12.248 Atomic orbital electron populations 1.22978 0.79763 1.03453 1.00519 1.86248 1.20022 1.26565 1.88317 1.18768 0.91640 0.84082 0.96731 1.21082 0.99320 0.92487 1.10559 1.20739 0.94591 0.96436 1.00195 1.20953 0.93829 0.97988 1.05177 1.20871 1.00417 0.90841 0.97175 1.20202 0.91203 0.97507 1.01316 1.18041 0.76651 0.89337 0.95541 0.93661 1.92714 1.46691 1.95153 1.87543 1.22119 1.39734 1.13095 0.90937 0.92343 1.25951 0.92401 0.93081 1.06153 1.70681 1.40954 1.40399 1.01041 0.83446 0.76278 0.76353 0.73484 1.21182 1.21322 1.20764 0.88611 0.93129 0.93376 0.86092 0.86608 0.86512 0.85259 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 15 2 O -0.30 -6.15 9.63 -19.42 -0.19 -6.34 15 3 C 0.13 2.79 6.66 -39.22 -0.26 2.52 15 4 C -0.22 -3.67 9.04 -39.43 -0.36 -4.03 15 5 C -0.10 -1.60 10.04 -39.60 -0.40 -2.00 15 6 C -0.16 -2.74 10.04 -39.56 -0.40 -3.14 15 7 C -0.07 -1.56 9.40 -39.61 -0.37 -1.93 15 8 C -0.10 -2.38 5.03 -104.48 -0.53 -2.90 15 9 C 0.24 6.58 2.68 -29.03 -0.08 6.51 15 10 H 0.05 1.31 7.55 -51.93 -0.39 0.91 15 11 F -0.24 -6.79 14.98 2.25 0.03 -6.75 15 12 C -0.62 -18.29 8.84 -34.44 -0.30 -18.59 15 13 H 0.06 1.72 7.74 -52.49 -0.41 1.32 15 14 C 0.03 0.92 5.42 -17.82 -0.10 0.82 15 15 N -0.90 -28.00 13.56 55.43 0.75 -27.25 15 16 Si 1.08 25.78 29.90 -169.99 -5.08 20.69 15 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 18 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 20 H 0.10 1.15 8.14 -51.93 -0.42 0.72 15 21 H 0.05 0.64 7.65 -51.92 -0.40 0.24 15 22 H 0.05 0.57 7.67 -51.92 -0.40 0.18 15 23 H 0.12 1.67 6.30 -52.48 -0.33 1.34 15 24 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.13 2.68 7.48 -52.49 -0.39 2.28 15 27 H 0.28 8.68 6.59 -40.82 -0.27 8.41 15 LS Contribution 241.60 15.07 3.64 3.64 Total: -1.00 -32.99 241.60 -5.29 -38.28 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.65 Total: -0.93 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.80 Total: -21.34 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.75 Total: -27.25 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.19 Total: -6.34 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.03 Total: -6.75 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.99 -5.29 -38.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.793 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds