Wall clock time and date at job start Mon Mar 30 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42885 * 1 3 3 C 1.35899 * 117.00542 * 2 1 4 4 C 1.38750 * 120.05251 * 0.24612 * 3 2 1 5 5 C 1.38127 * 119.94399 * 180.32285 * 4 3 2 6 6 C 1.38292 * 120.05594 * 359.68565 * 5 4 3 7 7 C 1.38245 * 120.10747 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05832 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02933 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47607 * 215.00689 * 9 8 7 11 11 F 1.39911 * 109.47093 * 335.00091 * 9 8 7 12 12 C 1.50702 * 109.47465 * 94.99894 * 9 8 7 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 H 1.08995 * 109.47810 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47161 * 300.00400 * 1 2 3 22 22 H 1.09008 * 109.47474 * 60.00189 * 1 2 3 23 23 H 1.08004 * 120.03394 * 0.02894 * 4 3 2 24 24 H 1.08000 * 119.97444 * 179.70406 * 5 4 3 25 25 H 1.07995 * 119.94307 * 180.02562 * 6 5 4 26 26 H 1.08001 * 119.97093 * 180.02562 * 7 6 5 27 27 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4288 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3752 0.0052 5 6 1.9209 3.6047 -0.0016 6 6 3.3020 3.6757 -0.0069 7 6 4.0560 2.5169 -0.0060 8 6 3.4311 1.2847 -0.0004 9 6 4.2536 0.0220 0.0000 10 1 3.7445 -0.7435 -0.5855 11 9 5.5078 0.2822 -0.5628 12 6 4.4293 -0.4627 1.4161 13 1 3.9890 0.0883 2.2340 14 6 5.1522 -1.6095 1.6675 15 7 5.6879 -2.2808 0.6715 16 14 5.3764 -2.2061 3.4234 17 1 6.6021 -1.5977 4.0002 18 1 4.1978 -1.8095 4.2352 19 1 5.5075 -3.6852 3.4308 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2128 2.3204 0.0097 24 1 1.3341 4.5114 -0.0024 25 1 3.7923 4.6379 -0.0118 26 1 5.1344 2.5750 -0.0098 27 1 5.5712 -1.9712 -0.2404 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259998364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:14 Heat of formation + Delta-G solvation = -94.420663 kcal Electronic energy + Delta-G solvation = -13735.434176 eV Core-core repulsion = 11178.752191 eV Total energy + Delta-G solvation = -2556.681985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.20162 -41.02599 -38.25595 -35.34792 -32.94485 -31.05360 -28.63869 -27.94100 -25.20005 -22.98581 -22.32332 -19.49670 -18.93605 -17.50344 -17.07490 -16.62028 -16.08739 -15.73339 -15.51438 -15.36549 -15.21514 -14.33570 -13.97822 -13.44874 -13.14489 -12.82578 -12.71297 -12.60919 -12.09917 -11.97409 -11.94483 -11.43748 -10.83928 -10.73457 -9.77410 -9.10933 -8.73728 -6.61415 0.38543 0.51071 1.48578 1.58891 1.77708 2.46939 2.49509 2.84407 3.04882 3.75697 3.93660 4.12716 4.27543 4.38364 4.39482 4.44307 4.50347 4.68510 4.77549 4.92589 5.11142 5.41289 5.52466 5.58160 5.74780 5.93169 5.99040 6.34200 6.56803 7.27237 8.58030 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.011318 C = 0.009923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.792627 B = 2473.433690 C = 2821.092104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.117 3.883 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.155 4.155 7 C -0.093 4.093 8 C -0.151 4.151 9 C 0.238 3.762 10 H 0.014 0.986 11 F -0.252 7.252 12 C -0.631 4.631 13 H 0.052 0.948 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.126 2.874 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.275 1.275 20 H 0.109 0.891 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.160 0.840 24 H 0.168 0.832 25 H 0.154 0.846 26 H 0.114 0.886 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 9.890 0.118 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.071 3.929 4 C -0.225 4.225 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.111 4.111 8 C -0.152 4.152 9 C 0.202 3.798 10 H 0.032 0.968 11 F -0.233 7.233 12 C -0.668 4.668 13 H 0.071 0.929 14 C -0.222 4.222 15 N -0.555 5.555 16 Si 0.945 3.055 17 H -0.195 1.195 18 H -0.193 1.193 19 H -0.200 1.200 20 H 0.127 0.873 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.177 0.823 24 H 0.185 0.815 25 H 0.171 0.829 26 H 0.132 0.868 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.408 8.518 0.984 13.486 hybrid contribution -0.472 0.916 -1.340 1.690 sum -10.880 9.434 -0.356 14.405 Atomic orbital electron populations 1.23343 0.76624 1.05201 1.02439 1.86184 1.23466 1.27340 1.88498 1.18966 0.91045 0.85612 0.97256 1.21520 1.01050 0.91370 1.08593 1.21360 0.94299 0.97799 0.96576 1.21335 0.94636 0.97843 1.03472 1.20916 1.00177 0.91579 0.98402 1.20001 0.92518 0.96346 1.06341 1.17884 0.76473 0.91463 0.93933 0.96833 1.92661 1.47638 1.95314 1.87677 1.22414 1.39327 1.13168 0.91922 0.92916 1.27651 0.91547 0.93298 1.09732 1.70825 1.42824 1.41211 1.00690 0.82859 0.77554 0.76371 0.68672 1.19466 1.19257 1.19975 0.87253 0.91392 0.90977 0.82289 0.81493 0.82856 0.86814 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 15 2 O -0.34 -14.16 9.63 -92.41 -0.89 -15.05 15 3 C 0.12 4.83 6.66 22.51 0.15 4.98 15 4 C -0.21 -6.28 9.04 22.37 0.20 -6.08 15 5 C -0.08 -2.19 10.04 22.26 0.22 -1.97 15 6 C -0.15 -4.77 10.04 22.28 0.22 -4.55 15 7 C -0.09 -3.86 9.40 22.25 0.21 -3.65 15 8 C -0.15 -7.30 5.03 -19.77 -0.10 -7.40 15 9 C 0.24 13.85 2.68 29.10 0.08 13.93 15 10 H 0.01 0.87 7.55 -2.39 -0.02 0.85 15 11 F -0.25 -15.17 14.98 44.97 0.67 -14.50 15 12 C -0.63 -38.59 8.84 25.60 0.23 -38.36 15 13 H 0.05 3.20 7.74 -2.91 -0.02 3.18 15 14 C -0.02 -1.35 5.42 84.65 0.46 -0.90 15 15 N -0.92 -59.71 13.56 21.45 0.29 -59.42 15 16 Si 1.13 52.10 29.90 68.60 2.05 54.15 15 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 20 H 0.11 2.47 8.14 -2.39 -0.02 2.45 15 21 H 0.07 1.51 7.65 -2.38 -0.02 1.49 15 22 H 0.07 1.51 7.67 -2.38 -0.02 1.49 15 23 H 0.16 3.54 6.30 -2.91 -0.02 3.52 15 24 H 0.17 2.82 8.06 -2.91 -0.02 2.80 15 25 H 0.15 3.56 8.06 -2.91 -0.02 3.53 15 26 H 0.11 4.91 7.48 -2.91 -0.02 4.88 15 27 H 0.26 17.24 6.59 -92.70 -0.61 16.63 15 Total: -1.00 -75.98 241.60 6.24 -69.74 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 1.33 Total: 7.50 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 2.78 Total: -42.42 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.29 Total: -59.42 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.89 Total: -15.05 kcal Atomic # 9 Polarization: -15.17 SS G_CDS: 0.67 Total: -14.50 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.05 Total: 54.15 kcal Total: -75.98 6.24 -69.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.677 kcal (2) G-P(sol) polarization free energy of solvation -75.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds