Wall clock time and date at job start Mon Mar 30 2020 02:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47146 * 264.84813 * 3 2 1 5 5 H 1.48496 * 109.47223 * 24.85004 * 3 2 1 6 6 H 1.48501 * 109.47213 * 144.85106 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00065 * 4.80266 * 7 2 1 9 9 C 1.50709 * 119.99987 * 184.80056 * 7 2 1 10 10 H 1.08994 * 109.46796 * 335.04006 * 9 7 2 11 11 C 1.53002 * 109.46946 * 95.04021 * 9 7 2 12 12 N 1.46898 * 109.46691 * 185.46471 * 11 9 7 13 13 C 1.50703 * 109.46900 * 215.04054 * 9 7 2 14 14 C 1.38631 * 120.79936 * 299.71752 * 13 9 7 15 15 C 1.38187 * 119.19219 * 179.80444 * 14 13 9 16 16 N 1.31881 * 120.81841 * 0.48244 * 15 14 13 17 17 C 1.31838 * 121.75302 * 359.74712 * 16 15 14 18 18 C 1.38467 * 120.72124 * 0.02562 * 17 16 15 19 19 F 1.35104 * 120.44062 * 180.02562 * 18 17 16 20 20 H 0.97000 * 119.99958 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47134 * 65.46367 * 11 9 7 22 22 H 1.08999 * 109.47172 * 305.45858 * 11 9 7 23 23 H 1.00901 * 110.99976 * 179.97438 * 12 11 9 24 24 H 1.00903 * 110.99793 * 303.94749 * 12 11 9 25 25 H 1.08001 * 120.40723 * 0.02759 * 14 13 9 26 26 H 1.07996 * 119.59204 * 180.20681 * 15 14 13 27 27 H 1.07993 * 119.63997 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6055 1.9836 -1.3944 5 1 1.3964 2.6816 0.5884 6 1 3.4880 1.4740 0.8060 7 6 2.0045 -1.1940 0.0005 8 1 1.4673 -2.1277 -0.0774 9 6 3.5076 -1.1963 0.1098 10 1 3.8999 -0.2480 -0.2575 11 6 3.9123 -1.3831 1.5734 12 7 5.3703 -1.2548 1.6985 13 6 4.0695 -2.3256 -0.7149 14 6 3.7270 -3.6413 -0.4438 15 6 4.2585 -4.6506 -1.2237 16 7 5.0897 -4.3757 -2.2100 17 6 5.4426 -3.1378 -2.4954 18 6 4.9472 -2.0738 -1.7607 19 9 5.3121 -0.8075 -2.0584 20 1 -0.4850 0.8400 -0.0004 21 1 3.6042 -2.3723 1.9121 22 1 3.4269 -0.6223 2.1846 23 1 5.6629 -1.3739 2.6567 24 1 5.8440 -1.9071 1.0917 25 1 3.0501 -3.8744 0.3649 26 1 3.9935 -5.6775 -1.0203 27 1 6.1254 -2.9517 -3.3111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022791.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:25 Heat of formation + Delta-G solvation = -41.438380 kcal Electronic energy + Delta-G solvation = -13822.188319 eV Core-core repulsion = 11300.096569 eV Total energy + Delta-G solvation = -2522.091750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.86835 -41.00724 -37.52676 -34.51173 -33.33141 -31.73678 -30.36147 -25.87597 -24.97773 -24.10217 -21.52475 -19.33542 -18.45123 -17.99207 -17.38022 -16.98266 -16.51258 -15.97955 -15.37467 -15.04151 -14.83304 -14.62931 -14.33191 -14.29556 -13.55769 -12.98814 -12.87616 -12.59340 -12.22874 -11.83613 -11.48859 -10.82282 -10.52198 -10.32599 -9.86414 -9.55340 -8.38222 -6.43427 0.03826 0.22493 1.30346 1.33975 1.46035 2.28281 2.73409 2.97780 3.19697 3.55690 3.73014 3.88065 3.92433 4.04939 4.40898 4.56551 4.62211 4.88222 4.92546 4.98302 5.27868 5.39673 5.54568 5.75156 6.10918 6.30103 6.59952 6.69252 6.87199 7.23258 8.76789 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.032218 B = 0.012161 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.857408 B = 2301.922790 C = 2345.106663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.028 3.972 3 Si 0.924 3.076 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.046 3.954 10 H 0.040 0.960 11 C 0.080 3.920 12 N -0.855 5.855 13 C -0.044 4.044 14 C -0.147 4.147 15 C 0.092 3.908 16 N -0.482 5.482 17 C 0.076 3.924 18 C 0.017 3.983 19 F -0.142 7.142 20 H 0.269 0.731 21 H 0.033 0.967 22 H 0.055 0.945 23 H 0.348 0.652 24 H 0.336 0.664 25 H 0.143 0.857 26 H 0.193 0.807 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -5.994 0.120 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.171 4.171 3 Si 0.748 3.252 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.026 3.974 10 H 0.059 0.941 11 C -0.051 4.051 12 N -0.386 5.386 13 C -0.053 4.053 14 C -0.167 4.167 15 C -0.064 4.064 16 N -0.191 5.191 17 C -0.082 4.082 18 C -0.004 4.004 19 F -0.121 7.121 20 H 0.078 0.922 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.161 0.839 24 H 0.148 0.852 25 H 0.161 0.839 26 H 0.210 0.790 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.875 -5.776 -0.634 12.330 hybrid contribution -0.635 1.001 0.725 1.390 sum 10.239 -4.775 0.091 11.298 Atomic orbital electron populations 1.69989 1.07791 1.28242 1.51356 1.25718 0.95319 1.02236 0.93876 0.86070 0.79840 0.79913 0.79334 1.20106 1.20834 1.16903 1.21006 0.89568 0.93753 1.50530 0.93116 1.18216 0.94247 0.92751 0.92150 0.94139 1.21923 0.87229 0.99144 0.96821 1.58755 1.06277 1.60571 1.12993 1.20902 0.92286 0.97501 0.94610 1.22080 1.00819 0.91455 1.02298 1.23235 0.92139 1.00991 0.90009 1.67773 1.13637 1.20462 1.17211 1.23114 0.99394 0.86442 0.99213 1.18991 1.01317 0.80570 0.99565 1.91443 1.90288 1.37803 1.92587 0.92208 0.94927 0.92625 0.83858 0.85154 0.83909 0.78981 0.79486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.96 21.45 0.30 -56.11 15 2 C 0.03 1.57 5.47 84.65 0.46 2.04 15 3 Si 0.92 44.53 26.99 68.60 1.85 46.38 15 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 6 H -0.25 -11.39 6.82 99.48 0.68 -10.71 15 7 C -0.51 -27.54 8.66 25.60 0.22 -27.32 15 8 H 0.05 2.96 7.75 -2.91 -0.02 2.93 15 9 C 0.05 2.06 1.83 -12.28 -0.02 2.04 15 10 H 0.04 1.97 4.39 -2.39 -0.01 1.95 15 11 C 0.08 3.12 6.13 86.30 0.53 3.65 15 12 N -0.86 -27.92 9.62 -186.72 -1.80 -29.71 15 13 C -0.04 -1.73 3.84 -19.63 -0.08 -1.81 15 14 C -0.15 -4.89 8.69 22.35 0.19 -4.69 15 15 C 0.09 2.58 11.18 84.67 0.95 3.53 15 16 N -0.48 -14.42 10.36 -195.67 -2.03 -16.45 15 17 C 0.08 2.32 11.17 84.75 0.95 3.26 15 18 C 0.02 0.63 7.29 22.47 0.16 0.79 15 19 F -0.14 -5.58 16.33 44.97 0.73 -4.84 15 20 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 21 H 0.03 1.19 7.28 -2.39 -0.02 1.17 15 22 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 23 H 0.35 9.16 9.08 -89.69 -0.81 8.35 15 24 H 0.34 10.36 8.09 -89.69 -0.73 9.63 15 25 H 0.14 4.62 7.61 -2.91 -0.02 4.60 15 26 H 0.19 3.82 8.06 -2.91 -0.02 3.80 15 27 H 0.19 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -63.53 239.32 2.07 -61.46 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.36 Total: 17.80 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.37 Total: -18.52 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.52 Total: -102.27 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.73 Total: -4.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.85 Total: 46.38 kcal Total: -63.53 2.07 -61.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022791.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.021 kcal (2) G-P(sol) polarization free energy of solvation -63.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds