Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47354 * 2 1 4 4 C 1.38315 * 119.91881 * 270.02895 * 3 2 1 5 5 C 1.38123 * 120.11089 * 179.74499 * 4 3 2 6 6 C 1.38826 * 119.95523 * 0.50320 * 5 4 3 7 7 O 1.35782 * 120.07768 * 179.74657 * 6 5 4 8 8 C 1.34818 * 117.00211 * 354.40345 * 7 6 5 9 9 H 1.07997 * 119.99789 * 5.05861 * 8 7 6 10 10 C 1.38651 * 119.99971 * 185.06445 * 8 7 6 11 11 N 1.31556 * 120.00157 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47400 * 60.00085 * 12 10 8 14 14 H 1.48499 * 109.47051 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47303 * 299.99898 * 12 10 8 16 16 C 1.39077 * 119.84547 * 359.47327 * 6 5 4 17 17 F 1.35094 * 120.06114 * 180.30077 * 16 6 5 18 18 C 1.38268 * 119.92339 * 90.00054 * 3 2 1 19 19 H 1.09007 * 109.46770 * 299.99614 * 1 2 3 20 20 H 1.08999 * 109.47644 * 59.99307 * 1 2 3 21 21 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46770 * 240.00386 * 2 1 3 23 23 H 1.08990 * 109.47467 * 120.00104 * 2 1 3 24 24 H 1.07996 * 119.94516 * 359.97438 * 4 3 2 25 25 H 1.07997 * 120.02274 * 180.25175 * 5 4 3 26 26 H 0.96999 * 120.00374 * 180.02562 * 11 10 8 27 27 H 1.08006 * 119.97982 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0714 -1.1988 5 6 2.7172 3.3754 -1.2035 6 6 2.9551 4.0308 -0.0030 7 8 3.4078 5.3110 -0.0047 8 6 3.7163 5.8495 -1.2015 9 1 3.5225 5.2964 -2.1086 10 6 4.2825 7.1134 -1.2677 11 7 4.5182 7.7874 -0.1627 12 14 4.7106 7.8593 -2.9259 13 1 3.4804 7.9738 -3.7498 14 1 5.2996 9.2077 -2.7250 15 1 5.6929 6.9893 -3.6213 16 6 2.7234 3.3751 1.2014 17 9 2.9476 4.0108 2.3721 18 6 2.2623 2.0711 1.1984 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 2.0810 1.5603 -2.1328 25 1 2.8920 3.8834 -2.1403 26 1 4.9139 8.6717 -0.2090 27 1 2.0821 1.5603 2.1328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -62.553241 kcal Electronic energy + Delta-G solvation = -13300.331812 eV Core-core repulsion = 10745.031702 eV Total energy + Delta-G solvation = -2555.300110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.78859 -39.00073 -36.97440 -33.13175 -32.14254 -29.85712 -28.02894 -25.49456 -23.15611 -22.10396 -20.41659 -18.10549 -17.19817 -15.96608 -15.37618 -14.84141 -14.65757 -14.04443 -13.82981 -13.62703 -13.19033 -13.07034 -12.63600 -12.02263 -11.87249 -11.72692 -11.14735 -11.04351 -10.72356 -10.61839 -10.56511 -10.37583 -9.52686 -8.88629 -8.12764 -7.20282 -6.50422 -4.09466 1.96572 2.12910 3.09709 3.11215 3.14381 3.90342 4.32971 4.90981 5.02700 5.15143 5.22961 5.44135 5.61772 5.67819 5.71420 5.90826 6.00587 6.06491 6.24525 6.38244 6.55111 6.75931 6.90960 7.05489 7.19575 7.28361 7.71081 7.90812 8.92893 9.58113 10.66525 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.008289 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.525163 B = 3376.962941 C = 3887.824264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.159 4.159 4 C -0.076 4.076 5 C -0.212 4.212 6 C 0.119 3.881 7 O -0.165 6.165 8 C -0.396 4.396 9 H 0.094 0.906 10 C 0.041 3.959 11 N -0.856 5.856 12 Si 0.944 3.056 13 H -0.269 1.269 14 H -0.277 1.277 15 H -0.269 1.269 16 C 0.020 3.980 17 F -0.145 7.145 18 C -0.106 4.106 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.273 0.727 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 -10.353 -2.333 11.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.160 4.160 4 C -0.094 4.094 5 C -0.232 4.232 6 C 0.064 3.936 7 O -0.068 6.068 8 C -0.472 4.472 9 H 0.111 0.889 10 C -0.165 4.165 11 N -0.489 5.489 12 Si 0.768 3.232 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.194 1.194 16 C 0.000 4.000 17 F -0.124 7.124 18 C -0.125 4.125 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.131 0.869 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.182 -9.901 -2.032 10.938 hybrid contribution 0.263 0.544 -0.647 0.885 sum -3.919 -9.357 -2.679 10.492 Atomic orbital electron populations 1.21779 0.95719 1.00698 1.02162 1.20276 0.95370 0.93041 1.01752 1.19144 1.07921 0.96616 0.92306 1.20668 0.97983 0.94000 0.96794 1.21014 1.08457 0.95932 0.97788 1.19377 0.95273 0.86550 0.92375 1.84033 1.70394 1.19311 1.33099 1.21335 1.42277 1.00686 0.82869 0.88855 1.25345 0.96045 0.95580 0.99489 1.70048 1.39182 1.12484 1.27228 0.85736 0.79145 0.78431 0.79852 1.19375 1.20180 1.19377 1.16886 1.11638 0.91966 0.79507 1.91413 1.93275 1.82172 1.45503 1.20505 1.01188 0.92340 0.98456 0.92757 0.92717 0.93222 0.91819 0.91939 0.86916 0.84723 0.91750 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.89 37.16 0.37 -1.33 15 2 C -0.07 -0.86 6.06 -27.88 -0.17 -1.03 15 3 C -0.16 -2.68 5.14 -104.58 -0.54 -3.22 15 4 C -0.08 -1.35 9.69 -39.60 -0.38 -1.74 15 5 C -0.21 -4.55 9.17 -39.41 -0.36 -4.91 15 6 C 0.12 2.97 6.65 -39.05 -0.26 2.71 15 7 O -0.17 -4.86 9.62 -0.02 0.00 -4.86 15 8 C -0.40 -11.10 9.49 30.88 0.29 -10.80 15 9 H 0.09 2.37 5.21 -52.49 -0.27 2.09 15 10 C 0.04 1.12 5.49 -17.52 -0.10 1.03 15 11 N -0.86 -25.34 13.67 55.48 0.76 -24.58 15 12 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 15 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 16 C 0.02 0.47 7.32 -39.24 -0.29 0.18 15 17 F -0.14 -3.51 17.12 2.25 0.04 -3.47 15 18 C -0.11 -1.98 9.67 -39.54 -0.38 -2.36 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 15 22 H 0.06 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.06 0.74 8.08 -51.93 -0.42 0.32 15 24 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 25 H 0.14 2.82 5.64 -52.49 -0.30 2.52 15 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 27 H 0.12 1.95 8.06 -52.48 -0.42 1.53 15 LS Contribution 245.72 15.07 3.70 3.70 Total: -1.00 -30.60 245.72 -5.00 -35.60 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.66 Total: -0.22 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -1.82 Total: -21.47 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.76 Total: -24.58 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: 0.00 Total: -4.86 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.04 Total: -3.47 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.60 -5.00 -35.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.952 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds