Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47354 * 2 1 4 4 C 1.38315 * 119.91881 * 270.02895 * 3 2 1 5 5 C 1.38123 * 120.11089 * 179.74499 * 4 3 2 6 6 C 1.38826 * 119.95523 * 0.50320 * 5 4 3 7 7 O 1.35782 * 120.07768 * 179.74657 * 6 5 4 8 8 C 1.34818 * 117.00211 * 354.40345 * 7 6 5 9 9 H 1.07997 * 119.99789 * 5.05861 * 8 7 6 10 10 C 1.38651 * 119.99971 * 185.06445 * 8 7 6 11 11 N 1.31556 * 120.00157 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99798 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47400 * 60.00085 * 12 10 8 14 14 H 1.48499 * 109.47051 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47303 * 299.99898 * 12 10 8 16 16 C 1.39077 * 119.84547 * 359.47327 * 6 5 4 17 17 F 1.35094 * 120.06114 * 180.30077 * 16 6 5 18 18 C 1.38268 * 119.92339 * 90.00054 * 3 2 1 19 19 H 1.09007 * 109.46770 * 299.99614 * 1 2 3 20 20 H 1.08999 * 109.47644 * 59.99307 * 1 2 3 21 21 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46770 * 240.00386 * 2 1 3 23 23 H 1.08990 * 109.47467 * 120.00104 * 2 1 3 24 24 H 1.07996 * 119.94516 * 359.97438 * 4 3 2 25 25 H 1.07997 * 120.02274 * 180.25175 * 5 4 3 26 26 H 0.96999 * 120.00374 * 180.02562 * 11 10 8 27 27 H 1.08006 * 119.97982 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0714 -1.1988 5 6 2.7172 3.3754 -1.2035 6 6 2.9551 4.0308 -0.0030 7 8 3.4078 5.3110 -0.0047 8 6 3.7163 5.8495 -1.2015 9 1 3.5225 5.2964 -2.1086 10 6 4.2825 7.1134 -1.2677 11 7 4.5182 7.7874 -0.1627 12 14 4.7106 7.8593 -2.9259 13 1 3.4804 7.9738 -3.7498 14 1 5.2996 9.2077 -2.7250 15 1 5.6929 6.9893 -3.6213 16 6 2.7234 3.3751 1.2014 17 9 2.9476 4.0108 2.3721 18 6 2.2623 2.0711 1.1984 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 1.8932 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 2.0810 1.5603 -2.1328 25 1 2.8920 3.8834 -2.1403 26 1 4.9139 8.6717 -0.2090 27 1 2.0821 1.5603 2.1328 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036771.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -81.606395 kcal Electronic energy + Delta-G solvation = -13301.158019 eV Core-core repulsion = 10745.031702 eV Total energy + Delta-G solvation = -2556.126317 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.63878 -40.74742 -38.67140 -34.67668 -33.87030 -31.48731 -29.53036 -27.41860 -24.46805 -23.77699 -21.90485 -19.96917 -19.05709 -17.62153 -17.15187 -16.69486 -16.36991 -15.57967 -15.29254 -15.13869 -14.92507 -14.68576 -13.92047 -13.75535 -13.43879 -13.09120 -12.77661 -12.62054 -12.17119 -12.08968 -11.83211 -11.71678 -11.35530 -10.81743 -9.75298 -8.96102 -8.50574 -6.20384 0.32143 0.49930 1.34467 1.46141 1.52155 2.14975 2.67172 3.03316 3.24511 3.56301 3.91353 4.02479 4.33670 4.38480 4.51125 4.65380 4.73749 4.94881 5.02366 5.14275 5.18903 5.28848 5.36456 5.50616 5.50633 5.73058 5.92427 6.10482 6.91852 7.66950 8.72228 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.008289 C = 0.007200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.525163 B = 3376.962941 C = 3887.824264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.129 4.129 4 C -0.069 4.069 5 C -0.213 4.213 6 C 0.075 3.925 7 O -0.227 6.227 8 C -0.420 4.420 9 H 0.110 0.890 10 C -0.024 4.024 11 N -0.921 5.921 12 Si 1.025 2.975 13 H -0.253 1.253 14 H -0.273 1.273 15 H -0.254 1.254 16 C -0.010 4.010 17 F -0.162 7.162 18 C -0.100 4.100 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.157 0.843 25 H 0.135 0.865 26 H 0.274 0.726 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -13.569 -4.174 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.087 4.087 5 C -0.232 4.232 6 C 0.024 3.976 7 O -0.134 6.134 8 C -0.495 4.495 9 H 0.127 0.873 10 C -0.222 4.222 11 N -0.559 5.559 12 Si 0.843 3.157 13 H -0.177 1.177 14 H -0.198 1.198 15 H -0.178 1.178 16 C -0.030 4.030 17 F -0.142 7.142 18 C -0.119 4.119 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.099 0.901 24 H 0.175 0.825 25 H 0.152 0.848 26 H 0.083 0.917 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.263 -13.189 -3.871 14.719 hybrid contribution 0.430 1.141 0.006 1.219 sum -4.833 -12.049 -3.865 13.545 Atomic orbital electron populations 1.21772 0.94433 1.02417 1.01707 1.20437 0.96258 0.89753 1.03965 1.19833 1.03648 0.98474 0.91062 1.21164 0.95955 0.92383 0.99209 1.21222 1.08097 0.97413 0.96499 1.20000 0.96817 0.86260 0.94546 1.83999 1.73585 1.21790 1.34028 1.21923 1.42738 1.01468 0.83391 0.87277 1.26746 0.95558 0.95756 1.04114 1.70215 1.42037 1.13287 1.30317 0.84565 0.79512 0.77396 0.74190 1.17748 1.19799 1.17809 1.17501 1.13208 0.93636 0.78615 1.91356 1.93647 1.82867 1.46286 1.20943 0.99603 0.90449 1.00890 0.93530 0.92987 0.90536 0.89412 0.90137 0.82538 0.84783 0.91691 0.82814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.89 71.98 0.71 -1.90 15 2 C -0.07 -1.32 6.06 29.85 0.18 -1.14 15 3 C -0.13 -3.83 5.14 -19.84 -0.10 -3.93 15 4 C -0.07 -2.21 9.69 22.26 0.22 -2.00 15 5 C -0.21 -9.00 9.17 22.38 0.21 -8.79 15 6 C 0.08 3.88 6.65 22.61 0.15 4.03 15 7 O -0.23 -14.24 9.62 -22.97 -0.22 -14.46 15 8 C -0.42 -24.66 9.49 67.92 0.64 -24.01 15 9 H 0.11 5.70 5.21 -2.91 -0.02 5.68 15 10 C -0.02 -1.38 5.49 84.83 0.47 -0.91 15 11 N -0.92 -57.89 13.67 21.61 0.30 -57.59 15 12 Si 1.03 42.60 29.55 68.60 2.03 44.63 15 13 H -0.25 -9.75 7.11 99.48 0.71 -9.05 15 14 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 15 H -0.25 -9.80 7.11 99.48 0.71 -9.09 15 16 C -0.01 -0.45 7.32 22.49 0.16 -0.28 15 17 F -0.16 -8.25 17.12 44.97 0.77 -7.48 15 18 C -0.10 -3.52 9.67 22.29 0.22 -3.30 15 19 H 0.05 0.91 8.14 -2.38 -0.02 0.89 15 20 H 0.05 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.09 1.43 8.08 -2.38 -0.02 1.41 15 23 H 0.08 1.40 8.08 -2.39 -0.02 1.38 15 24 H 0.16 3.70 8.06 -2.91 -0.02 3.67 15 25 H 0.13 5.58 5.64 -2.91 -0.02 5.56 15 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.36 15 Total: -1.00 -72.62 245.72 6.90 -65.72 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.17 Total: 11.43 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 2.85 Total: -42.25 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.30 Total: -57.59 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.77 Total: -7.48 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.62 6.90 -65.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036771.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.888 kcal (2) G-P(sol) polarization free energy of solvation -72.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds