Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38218 * 119.95215 * 2 1 4 4 C 1.38622 * 119.96860 * 179.97438 * 3 2 1 5 5 O 1.35950 * 120.06530 * 180.02562 * 4 3 2 6 6 C 1.38957 * 119.87261 * 0.06878 * 4 3 2 7 7 F 1.35100 * 120.04796 * 180.25122 * 6 4 3 8 8 C 1.38295 * 119.90253 * 359.97438 * 6 4 3 9 9 C 1.50697 * 119.98169 * 180.02562 * 8 6 4 10 10 C 1.50708 * 109.47154 * 279.99775 * 9 8 6 11 11 H 1.08006 * 119.99659 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00063 * 180.02562 * 10 9 8 13 13 N 1.31507 * 119.99920 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00077 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47307 * 89.99604 * 14 12 10 16 16 H 1.48496 * 109.47164 * 210.00171 * 14 12 10 17 17 H 1.48503 * 109.46882 * 329.99709 * 14 12 10 18 18 C 1.38220 * 119.94889 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.47309 * 269.98039 * 1 2 3 20 20 H 1.09006 * 109.46729 * 29.97613 * 1 2 3 21 21 H 1.09004 * 109.47278 * 149.97302 * 1 2 3 22 22 H 1.08000 * 120.02154 * 0.02562 * 3 2 1 23 23 H 0.96701 * 113.99793 * 270.00080 * 5 4 3 24 24 H 1.08998 * 109.47737 * 39.99632 * 9 8 6 25 25 H 1.09004 * 109.47363 * 160.00280 * 9 8 6 26 26 H 0.96999 * 120.00307 * 180.02562 * 13 12 10 27 27 H 1.08000 * 119.93691 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1976 0.0000 4 6 3.5833 1.1980 0.0005 5 8 4.2641 2.3748 0.0011 6 6 4.2758 -0.0068 -0.0004 7 9 5.6268 -0.0105 0.0053 8 6 3.5800 -1.2019 -0.0013 9 6 4.3291 -2.5095 -0.0017 10 6 4.7934 -2.8220 -1.4010 11 1 4.5688 -2.1415 -2.2091 12 6 5.5049 -3.9766 -1.6495 13 7 5.9096 -4.2495 -2.8706 14 14 5.8927 -5.1539 -0.2520 15 1 4.7990 -6.1504 -0.1263 16 1 7.1709 -5.8547 -0.5354 17 1 6.0167 -4.3922 1.0168 18 6 2.1971 -1.1976 -0.0005 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8903 -0.5135 21 1 -0.3634 -0.8898 -0.5143 22 1 1.6567 2.1326 0.0004 23 1 4.4614 2.7154 -0.8822 24 1 5.1926 -2.4338 0.6592 25 1 3.6717 -3.3051 0.3491 26 1 6.4098 -5.0619 -3.0456 27 1 1.6552 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260058202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -78.733755 kcal Electronic energy + Delta-G solvation = -13439.624134 eV Core-core repulsion = 10883.622384 eV Total energy + Delta-G solvation = -2556.001750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.09003 -39.23816 -36.79374 -33.70764 -32.00089 -30.33526 -27.79674 -26.26416 -23.26627 -21.78706 -19.99138 -17.73172 -16.87345 -16.82019 -16.31387 -15.21141 -14.47682 -14.07802 -13.79158 -13.39301 -13.25133 -12.94107 -12.55326 -12.26995 -11.99276 -11.60842 -11.21843 -11.15213 -10.73565 -10.44989 -10.06600 -9.90890 -9.44155 -8.61310 -8.16936 -7.88609 -6.10579 -4.10387 1.50693 1.66629 3.26817 3.35056 3.38585 3.87539 4.38527 4.39216 4.83890 5.08702 5.22380 5.26666 5.49323 5.58346 5.71187 5.87049 5.99427 6.18317 6.41414 6.52077 6.69159 6.81717 6.91619 7.19585 7.27736 7.62674 7.86779 8.43096 8.91842 9.48845 11.02337 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.009940 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.891447 B = 2816.198004 C = 3251.847281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.088 4.088 3 C -0.142 4.142 4 C 0.066 3.934 5 O -0.493 6.493 6 C 0.073 3.927 7 F -0.128 7.128 8 C -0.049 4.049 9 C 0.016 3.984 10 C -0.514 4.514 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.264 1.264 18 C -0.105 4.105 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.128 0.872 23 H 0.386 0.614 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.265 0.735 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 8.510 5.665 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 C -0.161 4.161 4 C 0.021 3.979 5 O -0.303 6.303 6 C 0.053 3.947 7 F -0.106 7.106 8 C -0.050 4.050 9 C -0.021 4.021 10 C -0.552 4.552 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.189 1.189 18 C -0.123 4.123 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.146 0.854 23 H 0.242 0.758 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.337 8.320 6.164 13.294 hybrid contribution 0.654 -0.578 -0.014 0.873 sum -7.683 7.742 6.150 12.522 Atomic orbital electron populations 1.20727 0.91006 1.02678 1.02045 1.19731 0.96045 0.92519 1.00559 1.20905 0.92090 0.98275 1.04800 1.18389 0.90299 0.84030 1.05163 1.84824 1.76394 1.35640 1.33415 1.17966 0.77646 0.93346 1.05752 1.91477 1.28236 1.97233 1.93660 1.20330 0.94019 0.95524 0.95097 1.18779 0.95261 0.88863 0.99246 1.20839 1.35232 1.07307 0.91814 0.90897 1.24956 0.94947 0.97577 0.95530 1.69887 1.38006 1.26047 1.19667 0.86808 0.78178 0.81342 0.83268 1.20038 1.21077 1.18878 1.20882 0.92795 0.97738 1.00879 0.91397 0.91808 0.91333 0.85419 0.75839 0.94820 0.95170 0.92506 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 15 2 C -0.09 -1.34 5.88 -104.63 -0.62 -1.96 15 3 C -0.14 -2.18 9.64 -39.45 -0.38 -2.56 15 4 C 0.07 1.18 6.71 -39.17 -0.26 0.92 15 5 O -0.49 -7.77 13.37 -19.58 -0.26 -8.04 15 6 C 0.07 1.54 7.24 -39.29 -0.28 1.25 15 7 F -0.13 -2.94 16.50 2.25 0.04 -2.90 15 8 C -0.05 -1.05 5.08 -104.58 -0.53 -1.58 15 9 C 0.02 0.38 3.90 -29.03 -0.11 0.27 15 10 C -0.51 -14.76 9.64 -34.44 -0.33 -15.10 15 11 H 0.07 2.28 7.98 -52.48 -0.42 1.86 15 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 13 N -0.90 -27.60 13.96 55.43 0.77 -26.83 15 14 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 15 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.28 -6.94 7.11 56.52 0.40 -6.53 15 17 H -0.26 -6.28 6.54 56.52 0.37 -5.91 15 18 C -0.10 -1.88 9.32 -39.57 -0.37 -2.25 15 19 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.06 0.61 8.08 -51.93 -0.42 0.19 15 21 H 0.07 0.72 8.08 -51.93 -0.42 0.30 15 22 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 23 H 0.39 4.27 9.06 45.56 0.41 4.68 15 24 H 0.03 0.85 7.00 -51.93 -0.36 0.48 15 25 H 0.03 0.69 7.43 -51.93 -0.39 0.31 15 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 27 H 0.13 2.14 8.03 -52.49 -0.42 1.72 15 LS Contribution 245.12 15.07 3.69 3.69 Total: -1.00 -32.34 245.12 -5.08 -37.42 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.03 Total: -0.34 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -2.62 Total: -19.85 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.26 Total: -8.04 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -32.34 -5.08 -37.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.315 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds