Wall clock time and date at job start Mon Mar 30 2020 02:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38218 * 119.95215 * 2 1 4 4 C 1.38622 * 119.96860 * 179.97438 * 3 2 1 5 5 O 1.35950 * 120.06530 * 180.02562 * 4 3 2 6 6 C 1.38957 * 119.87261 * 0.06878 * 4 3 2 7 7 F 1.35100 * 120.04796 * 180.25122 * 6 4 3 8 8 C 1.38295 * 119.90253 * 359.97438 * 6 4 3 9 9 C 1.50697 * 119.98169 * 180.02562 * 8 6 4 10 10 C 1.50708 * 109.47154 * 279.99775 * 9 8 6 11 11 H 1.08006 * 119.99659 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00063 * 180.02562 * 10 9 8 13 13 N 1.31507 * 119.99920 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 120.00077 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47307 * 89.99604 * 14 12 10 16 16 H 1.48496 * 109.47164 * 210.00171 * 14 12 10 17 17 H 1.48503 * 109.46882 * 329.99709 * 14 12 10 18 18 C 1.38220 * 119.94889 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.47309 * 269.98039 * 1 2 3 20 20 H 1.09006 * 109.46729 * 29.97613 * 1 2 3 21 21 H 1.09004 * 109.47278 * 149.97302 * 1 2 3 22 22 H 1.08000 * 120.02154 * 0.02562 * 3 2 1 23 23 H 0.96701 * 113.99793 * 270.00080 * 5 4 3 24 24 H 1.08998 * 109.47737 * 39.99632 * 9 8 6 25 25 H 1.09004 * 109.47363 * 160.00280 * 9 8 6 26 26 H 0.96999 * 120.00307 * 180.02562 * 13 12 10 27 27 H 1.08000 * 119.93691 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1976 0.0000 4 6 3.5833 1.1980 0.0005 5 8 4.2641 2.3748 0.0011 6 6 4.2758 -0.0068 -0.0004 7 9 5.6268 -0.0105 0.0053 8 6 3.5800 -1.2019 -0.0013 9 6 4.3291 -2.5095 -0.0017 10 6 4.7934 -2.8220 -1.4010 11 1 4.5688 -2.1415 -2.2091 12 6 5.5049 -3.9766 -1.6495 13 7 5.9096 -4.2495 -2.8706 14 14 5.8927 -5.1539 -0.2520 15 1 4.7990 -6.1504 -0.1263 16 1 7.1709 -5.8547 -0.5354 17 1 6.0167 -4.3922 1.0168 18 6 2.1971 -1.1976 -0.0005 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8903 -0.5135 21 1 -0.3634 -0.8898 -0.5143 22 1 1.6567 2.1326 0.0004 23 1 4.4614 2.7154 -0.8822 24 1 5.1926 -2.4338 0.6592 25 1 3.6717 -3.3051 0.3491 26 1 6.4098 -5.0619 -3.0456 27 1 1.6552 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:30 Heat of formation + Delta-G solvation = -101.472783 kcal Electronic energy + Delta-G solvation = -13440.610172 eV Core-core repulsion = 10883.622384 eV Total energy + Delta-G solvation = -2556.987788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.74127 -40.58583 -38.11169 -35.55056 -33.78972 -31.75481 -29.54329 -27.43843 -25.13547 -23.21544 -21.52881 -19.08956 -19.06337 -18.28665 -17.75134 -16.72445 -16.42896 -15.64354 -15.12035 -15.02963 -14.50290 -14.35988 -14.26423 -13.81861 -13.49920 -13.08487 -12.76268 -12.51771 -12.33988 -12.09872 -11.86530 -11.67435 -11.36975 -10.82924 -9.59903 -9.31942 -8.34649 -6.40440 0.13579 0.27113 1.32420 1.35921 1.47374 2.31731 2.52012 2.98956 3.09398 3.47318 3.87441 3.93824 4.24802 4.34616 4.61000 4.79235 4.89842 4.93760 5.01904 5.07682 5.19893 5.33246 5.45638 5.51155 5.63147 5.88629 6.18035 6.63090 6.70797 7.22786 8.82010 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.009940 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.891447 B = 2816.198004 C = 3251.847281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.072 3.928 5 O -0.498 6.498 6 C 0.028 3.972 7 F -0.152 7.152 8 C -0.082 4.082 9 C 0.022 3.978 10 C -0.522 4.522 11 H 0.027 0.973 12 C 0.011 3.989 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.255 1.255 16 H -0.281 1.281 17 H -0.253 1.253 18 C -0.114 4.114 19 H 0.089 0.911 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.168 0.832 23 H 0.407 0.593 24 H 0.021 0.979 25 H 0.046 0.954 26 H 0.269 0.731 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 9.167 7.169 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.073 4.073 3 C -0.148 4.148 4 C 0.026 3.974 5 O -0.310 6.310 6 C 0.008 3.992 7 F -0.131 7.131 8 C -0.083 4.083 9 C -0.015 4.015 10 C -0.560 4.560 11 H 0.045 0.955 12 C -0.187 4.187 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.179 1.179 16 H -0.206 1.206 17 H -0.177 1.177 18 C -0.132 4.132 19 H 0.107 0.893 20 H 0.105 0.895 21 H 0.093 0.907 22 H 0.186 0.814 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.592 8.999 7.661 15.870 hybrid contribution 1.272 -0.624 -0.558 1.523 sum -9.320 8.375 7.102 14.403 Atomic orbital electron populations 1.20847 0.87368 1.04231 1.03834 1.20220 0.98441 0.91243 0.97389 1.21357 0.90926 1.00036 1.02497 1.18521 0.91260 0.83413 1.04160 1.84760 1.76418 1.34531 1.35338 1.18442 0.76936 0.95007 1.08781 1.91395 1.30045 1.97424 1.94263 1.20244 0.95571 0.94265 0.98218 1.18586 0.95451 0.91403 0.96085 1.21053 1.35369 1.06525 0.93031 0.95491 1.25954 0.94625 0.99653 0.98457 1.70039 1.39250 1.27097 1.22216 0.85668 0.78545 0.78917 0.79675 1.17891 1.20642 1.17725 1.21106 0.91432 0.99763 1.00916 0.89263 0.89460 0.90702 0.81450 0.73400 0.96069 0.93593 0.92183 0.83933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.01 71.24 0.71 -1.14 15 2 C -0.07 -1.97 5.88 -19.87 -0.12 -2.09 15 3 C -0.13 -3.53 9.64 22.36 0.22 -3.31 15 4 C 0.07 2.46 6.71 22.53 0.15 2.61 15 5 O -0.50 -14.89 13.37 -92.98 -1.24 -16.13 15 6 C 0.03 1.20 7.24 22.46 0.16 1.37 15 7 F -0.15 -7.38 16.50 44.97 0.74 -6.64 15 8 C -0.08 -3.58 5.08 -19.84 -0.10 -3.68 15 9 C 0.02 1.09 3.90 29.10 0.11 1.20 15 10 C -0.52 -31.23 9.64 25.60 0.25 -30.98 15 11 H 0.03 1.79 7.98 -2.91 -0.02 1.77 15 12 C 0.01 0.63 5.47 84.66 0.46 1.09 15 13 N -0.95 -60.11 13.96 21.45 0.30 -59.81 15 14 Si 0.95 44.75 27.47 68.60 1.88 46.63 15 15 H -0.25 -11.13 7.11 99.48 0.71 -10.42 15 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 17 H -0.25 -11.40 6.54 99.48 0.65 -10.75 15 18 C -0.11 -3.95 9.32 22.28 0.21 -3.75 15 19 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.09 1.17 8.08 -2.38 -0.02 1.15 15 21 H 0.07 1.26 8.08 -2.38 -0.02 1.24 15 22 H 0.17 3.23 8.06 -2.91 -0.02 3.21 15 23 H 0.41 8.34 9.06 -74.06 -0.67 7.67 15 24 H 0.02 1.09 7.00 -2.39 -0.02 1.07 15 25 H 0.05 2.10 7.43 -2.39 -0.02 2.08 15 26 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 27 H 0.14 4.44 8.03 -2.91 -0.02 4.42 15 Total: -1.00 -73.31 245.12 4.20 -69.11 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.46 Total: 5.49 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 2.06 Total: -38.67 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.30 Total: -59.81 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.24 Total: -16.13 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.74 Total: -6.64 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -73.31 4.20 -69.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.358 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds