Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46842 * 2 1 4 4 F 1.39896 * 109.46804 * 119.99965 * 2 1 3 5 5 C 1.50700 * 109.46995 * 240.00185 * 2 1 3 6 6 C 1.38348 * 119.97791 * 94.99965 * 5 2 1 7 7 C 1.38779 * 120.59356 * 180.02562 * 6 5 2 8 8 C 1.36522 * 120.53516 * 359.97438 * 7 6 5 9 9 C 1.40694 * 119.93406 * 359.97438 * 8 7 6 10 10 C 1.41150 * 120.29239 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99590 * 154.62592 * 10 9 8 12 12 C 1.39931 * 120.00256 * 334.63404 * 10 9 8 13 13 N 1.30867 * 119.99759 * 342.96448 * 12 10 9 14 14 Si 1.86803 * 120.00205 * 162.96730 * 12 10 9 15 15 H 1.48500 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47203 * 120.00080 * 14 12 10 17 17 H 1.48503 * 109.46777 * 240.00036 * 14 12 10 18 18 C 1.38413 * 119.97120 * 274.72194 * 5 2 1 19 19 O 1.35642 * 120.26342 * 0.02562 * 18 5 2 20 20 H 1.08998 * 109.47364 * 300.00186 * 1 2 3 21 21 H 1.08999 * 109.47643 * 60.00060 * 1 2 3 22 22 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.70187 * 359.97302 * 6 5 2 24 24 H 1.07993 * 119.73129 * 179.97438 * 7 6 5 25 25 H 1.08006 * 120.03278 * 180.02562 * 8 7 6 26 26 H 0.97001 * 119.99904 * 179.97438 * 13 12 10 27 27 H 0.96696 * 114.00184 * 90.00388 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9962 -0.6595 1.1423 5 6 2.0323 -0.7104 -1.2305 6 6 2.3612 0.0151 -2.3617 7 6 2.8244 -0.6260 -3.5020 8 6 2.9638 -1.9839 -3.5261 9 6 2.6369 -2.7435 -2.3879 10 6 2.7776 -4.1479 -2.4046 11 1 2.9314 -4.6862 -1.4811 12 6 2.7180 -4.8426 -3.6178 13 7 2.2102 -4.2665 -4.6775 14 14 3.3631 -6.5925 -3.7248 15 1 3.8826 -7.0105 -2.3980 16 1 2.2628 -7.5015 -4.1350 17 1 4.4573 -6.6562 -4.7268 18 6 2.1697 -2.0877 -1.2261 19 8 1.8534 -2.8027 -0.1177 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.2556 1.0899 -2.3575 24 1 3.0767 -0.0461 -4.3774 25 1 3.3255 -2.4744 -4.4178 26 1 2.1692 -4.7479 -5.5186 27 1 0.9318 -3.0938 -0.0872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260081632.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = -87.818042 kcal Electronic energy + Delta-G solvation = -13750.026987 eV Core-core repulsion = 11193.631313 eV Total energy + Delta-G solvation = -2556.395674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.83116 -38.23582 -35.16356 -34.04532 -32.04164 -29.30352 -27.95676 -25.24487 -22.91138 -20.86357 -20.05221 -17.27274 -16.82966 -15.75512 -15.19013 -14.81916 -14.38669 -14.00837 -13.60691 -13.23315 -12.74131 -12.22003 -11.92481 -11.63163 -11.41249 -11.33046 -10.96540 -10.80659 -10.58183 -10.33784 -10.17711 -9.68256 -9.25191 -8.86231 -7.48263 -7.31893 -6.83022 -4.40420 2.66304 2.73114 3.04952 3.11421 3.14359 3.89543 4.49875 5.23322 5.26440 5.37541 5.50723 5.65657 5.88426 6.03082 6.23383 6.40525 6.45305 6.55889 6.96547 7.12961 7.24344 7.37405 7.66698 7.87263 7.98634 8.14336 8.45047 8.73434 8.78069 9.18886 10.09814 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.010264 C = 0.008925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.404095 B = 2727.221919 C = 3136.366283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 H 0.073 0.927 4 F -0.206 7.206 5 C -0.122 4.122 6 C -0.221 4.221 7 C -0.110 4.110 8 C -0.150 4.150 9 C 0.091 3.909 10 C -0.447 4.447 11 H 0.086 0.914 12 C 0.073 3.927 13 N -0.793 5.793 14 Si 0.911 3.089 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.271 1.271 18 C 0.000 4.000 19 O -0.483 6.483 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.281 0.719 27 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 3.432 2.260 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.105 3.895 3 H 0.091 0.909 4 F -0.187 7.187 5 C -0.123 4.123 6 C -0.240 4.240 7 C -0.128 4.128 8 C -0.170 4.170 9 C 0.088 3.912 10 C -0.476 4.476 11 H 0.104 0.896 12 C -0.145 4.145 13 N -0.418 5.418 14 Si 0.735 3.265 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.046 4.046 19 O -0.289 6.289 20 H 0.077 0.923 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.138 0.862 26 H 0.092 0.908 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.830 3.453 2.194 4.482 hybrid contribution -0.298 -0.856 -0.382 0.983 sum -2.129 2.597 1.812 3.816 Atomic orbital electron populations 1.22282 0.94882 1.03192 1.02184 1.20125 0.93845 0.94414 0.81115 0.90915 1.92821 1.90246 1.83488 1.52146 1.20015 1.03687 0.93923 0.94663 1.19993 1.12822 0.97113 0.94099 1.20396 1.00966 0.95089 0.96354 1.21026 1.03809 0.92131 0.99997 1.17916 0.89480 0.93840 0.89994 1.19575 1.42132 0.91963 0.93967 0.89639 1.25987 0.92509 1.00878 0.95080 1.69843 1.31544 1.38723 1.01708 0.86211 0.79315 0.81296 0.79666 1.18215 1.19946 1.19657 1.18231 1.09322 0.87977 0.89076 1.84811 1.30754 1.73199 1.40155 0.92337 0.91060 0.91698 0.88996 0.89043 0.86152 0.90804 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.63 37.16 0.36 -2.26 15 2 C 0.14 2.67 4.06 -27.88 -0.11 2.56 15 3 H 0.07 1.21 8.05 -51.93 -0.42 0.80 15 4 F -0.21 -4.36 15.31 2.25 0.03 -4.33 15 5 C -0.12 -2.76 5.04 -104.52 -0.53 -3.28 15 6 C -0.22 -4.84 9.67 -39.34 -0.38 -5.22 15 7 C -0.11 -2.53 9.97 -40.00 -0.40 -2.93 15 8 C -0.15 -3.88 8.63 -39.27 -0.34 -4.22 15 9 C 0.09 2.44 5.58 -106.68 -0.59 1.85 15 10 C -0.45 -11.98 8.72 -37.84 -0.33 -12.31 15 11 H 0.09 2.29 7.66 -52.48 -0.40 1.89 15 12 C 0.07 1.83 5.15 -17.33 -0.09 1.74 15 13 N -0.79 -20.12 10.97 55.55 0.61 -19.51 15 14 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 15 15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 18 C 0.00 -0.01 6.62 -38.33 -0.25 -0.26 15 19 O -0.48 -11.45 10.92 -18.63 -0.20 -11.65 15 20 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.09 1.74 8.06 -52.49 -0.42 1.32 15 24 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 25 H 0.12 3.18 6.19 -52.48 -0.33 2.85 15 26 H 0.28 6.45 8.30 -40.82 -0.34 6.11 15 27 H 0.35 7.03 9.06 45.56 0.41 7.44 15 LS Contribution 240.99 15.07 3.63 3.63 Total: -1.00 -28.60 240.99 -5.61 -34.21 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -1.98 Total: 8.37 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.67 Total: -24.35 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.61 Total: -19.51 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.20 Total: -11.65 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.03 Total: -4.33 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.60 -5.61 -34.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081632.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.610 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds