Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46842 * 2 1 4 4 F 1.39896 * 109.46804 * 119.99965 * 2 1 3 5 5 C 1.50700 * 109.46995 * 240.00185 * 2 1 3 6 6 C 1.38348 * 119.97791 * 94.99965 * 5 2 1 7 7 C 1.38779 * 120.59356 * 180.02562 * 6 5 2 8 8 C 1.36522 * 120.53516 * 359.97438 * 7 6 5 9 9 C 1.40694 * 119.93406 * 359.97438 * 8 7 6 10 10 C 1.41150 * 120.29239 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99590 * 154.62592 * 10 9 8 12 12 C 1.39931 * 120.00256 * 334.63404 * 10 9 8 13 13 N 1.30867 * 119.99759 * 342.96448 * 12 10 9 14 14 Si 1.86803 * 120.00205 * 162.96730 * 12 10 9 15 15 H 1.48500 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47203 * 120.00080 * 14 12 10 17 17 H 1.48503 * 109.46777 * 240.00036 * 14 12 10 18 18 C 1.38413 * 119.97120 * 274.72194 * 5 2 1 19 19 O 1.35642 * 120.26342 * 0.02562 * 18 5 2 20 20 H 1.08998 * 109.47364 * 300.00186 * 1 2 3 21 21 H 1.08999 * 109.47643 * 60.00060 * 1 2 3 22 22 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.70187 * 359.97302 * 6 5 2 24 24 H 1.07993 * 119.73129 * 179.97438 * 7 6 5 25 25 H 1.08006 * 120.03278 * 180.02562 * 8 7 6 26 26 H 0.97001 * 119.99904 * 179.97438 * 13 12 10 27 27 H 0.96696 * 114.00184 * 90.00388 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9962 -0.6595 1.1423 5 6 2.0323 -0.7104 -1.2305 6 6 2.3612 0.0151 -2.3617 7 6 2.8244 -0.6260 -3.5020 8 6 2.9638 -1.9839 -3.5261 9 6 2.6369 -2.7435 -2.3879 10 6 2.7776 -4.1479 -2.4046 11 1 2.9314 -4.6862 -1.4811 12 6 2.7180 -4.8426 -3.6178 13 7 2.2102 -4.2665 -4.6775 14 14 3.3631 -6.5925 -3.7248 15 1 3.8826 -7.0105 -2.3980 16 1 2.2628 -7.5015 -4.1350 17 1 4.4573 -6.6562 -4.7268 18 6 2.1697 -2.0877 -1.2261 19 8 1.8534 -2.8027 -0.1177 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 2.2556 1.0899 -2.3575 24 1 3.0767 -0.0461 -4.3774 25 1 3.3255 -2.4744 -4.4178 26 1 2.1692 -4.7479 -5.5186 27 1 0.9318 -3.0938 -0.0872 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081632.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = -105.506382 kcal Electronic energy + Delta-G solvation = -13750.794011 eV Core-core repulsion = 11193.631313 eV Total energy + Delta-G solvation = -2557.162698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.39881 -40.06808 -37.02152 -35.86292 -33.64297 -31.13923 -29.61037 -27.14651 -24.47639 -22.70739 -21.79077 -19.11310 -18.66799 -17.47079 -16.90115 -16.45666 -16.00212 -15.72518 -15.37605 -14.97244 -14.50193 -13.63475 -13.47270 -13.22881 -13.14862 -13.01368 -12.65597 -12.54254 -12.22199 -12.01109 -11.79010 -11.50816 -11.08815 -10.66428 -9.36043 -9.16489 -8.68055 -6.37276 0.85930 0.88952 1.36187 1.46713 1.51559 2.18755 2.64425 3.49955 3.73865 3.90459 3.96754 4.15083 4.33611 4.53312 4.79934 4.84738 4.97731 5.07046 5.20233 5.25810 5.43126 5.55206 5.84437 6.00453 6.09307 6.27209 6.53955 6.83617 6.85345 7.36587 8.27108 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.010264 C = 0.008925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.404095 B = 2727.221919 C = 3136.366283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.104 0.896 4 F -0.222 7.222 5 C -0.127 4.127 6 C -0.212 4.212 7 C -0.112 4.112 8 C -0.176 4.176 9 C 0.056 3.944 10 C -0.486 4.486 11 H 0.070 0.930 12 C 0.037 3.963 13 N -0.821 5.821 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.262 1.262 17 H -0.262 1.262 18 C -0.023 4.023 19 O -0.492 6.492 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.052 0.948 23 H 0.133 0.867 24 H 0.120 0.880 25 H 0.105 0.895 26 H 0.290 0.710 27 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 4.576 2.358 5.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.122 0.878 4 F -0.203 7.203 5 C -0.128 4.128 6 C -0.231 4.231 7 C -0.130 4.130 8 C -0.196 4.196 9 C 0.054 3.946 10 C -0.515 4.515 11 H 0.088 0.912 12 C -0.178 4.178 13 N -0.446 5.446 14 Si 0.803 3.197 15 H -0.188 1.188 16 H -0.186 1.186 17 H -0.186 1.186 18 C -0.068 4.068 19 O -0.300 6.300 20 H 0.105 0.895 21 H 0.102 0.898 22 H 0.071 0.929 23 H 0.150 0.850 24 H 0.138 0.862 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.267 4.615 2.292 5.630 hybrid contribution -0.199 -1.071 -0.377 1.153 sum -2.466 3.544 1.915 4.723 Atomic orbital electron populations 1.22249 0.92277 1.03116 1.04271 1.20432 0.95916 0.94947 0.78732 0.87782 1.92792 1.90648 1.84026 1.52825 1.20482 1.02506 0.93171 0.96612 1.20467 1.10495 0.99091 0.93079 1.20748 1.00039 0.94263 0.97986 1.21015 1.05603 0.93508 0.99431 1.18308 0.90518 0.94468 0.91336 1.19652 1.44973 0.92537 0.94371 0.91209 1.26741 0.92051 1.04841 0.94195 1.69867 1.31952 1.40503 1.02321 0.85157 0.79028 0.76185 0.79331 1.18847 1.18625 1.18601 1.18528 1.10051 0.89382 0.88881 1.84743 1.32050 1.73426 1.39765 0.89465 0.89759 0.92922 0.84965 0.86247 0.87733 0.89905 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 9.63 71.98 0.69 -3.84 15 2 C 0.14 4.73 4.06 29.85 0.12 4.85 15 3 H 0.10 3.01 8.05 -2.39 -0.02 2.99 15 4 F -0.22 -9.01 15.31 44.97 0.69 -8.32 15 5 C -0.13 -5.52 5.04 -19.80 -0.10 -5.62 15 6 C -0.21 -8.72 9.67 22.43 0.22 -8.51 15 7 C -0.11 -5.03 9.97 22.00 0.22 -4.81 15 8 C -0.18 -9.24 8.63 22.47 0.19 -9.05 15 9 C 0.06 3.12 5.58 -21.20 -0.12 3.00 15 10 C -0.49 -27.07 8.72 23.40 0.20 -26.87 15 11 H 0.07 3.94 7.66 -2.91 -0.02 3.92 15 12 C 0.04 1.88 5.15 85.25 0.44 2.32 15 13 N -0.82 -42.49 10.97 21.83 0.24 -42.25 15 14 Si 0.98 38.87 29.59 68.60 2.03 40.90 15 15 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 16 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 17 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 18 C -0.02 -1.16 6.62 23.08 0.15 -1.01 15 19 O -0.49 -23.72 10.92 -89.57 -0.98 -24.70 15 20 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.05 1.59 8.14 -2.38 -0.02 1.57 15 23 H 0.13 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.12 4.58 8.06 -2.91 -0.02 4.55 15 25 H 0.10 5.70 6.19 -2.91 -0.02 5.69 15 26 H 0.29 13.45 8.30 -92.71 -0.77 12.68 15 27 H 0.37 14.94 9.06 -74.06 -0.67 14.27 15 Total: -1.00 -62.44 240.99 4.52 -57.92 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.52 Total: 25.98 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 2.02 Total: -49.53 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.24 Total: -42.25 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.98 Total: -24.70 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.69 Total: -8.32 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -62.44 4.52 -57.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081632.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.589 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds