Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47302 * 2 1 4 4 F 1.39896 * 109.47415 * 239.99468 * 2 1 3 5 5 C 1.50702 * 109.46828 * 119.99277 * 2 1 3 6 6 C 1.38356 * 119.97284 * 94.72999 * 5 2 1 7 7 C 1.38769 * 120.59322 * 179.71869 * 6 5 2 8 8 C 1.36527 * 120.53742 * 0.55498 * 7 6 5 9 9 C 1.40697 * 119.92843 * 359.72386 * 8 7 6 10 10 C 1.41153 * 120.28662 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99382 * 150.06281 * 10 9 8 12 12 C 1.39935 * 120.00534 * 330.06629 * 10 9 8 13 13 N 1.30860 * 119.99713 * 161.81354 * 12 10 9 14 14 Si 1.86794 * 119.99824 * 341.81907 * 12 10 9 15 15 H 1.48496 * 109.47437 * 95.40428 * 14 12 10 16 16 H 1.48509 * 109.47165 * 215.40306 * 14 12 10 17 17 H 1.48505 * 109.47232 * 335.40229 * 14 12 10 18 18 C 1.38401 * 119.97937 * 275.00185 * 5 2 1 19 19 O 1.35649 * 120.26445 * 0.02562 * 18 5 2 20 20 H 1.09000 * 109.47088 * 300.00287 * 1 2 3 21 21 H 1.08997 * 109.46647 * 60.00580 * 1 2 3 22 22 H 1.08997 * 109.47022 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.70407 * 359.97164 * 6 5 2 24 24 H 1.07998 * 119.73659 * 180.25904 * 7 6 5 25 25 H 1.07999 * 120.04209 * 179.69956 * 8 7 6 26 26 H 0.97004 * 119.99802 * 179.97438 * 13 12 10 27 27 H 0.96700 * 113.99728 * 89.99901 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6596 -1.1422 5 6 2.0323 -0.7103 1.2306 6 6 2.3559 -2.0541 1.1694 7 6 2.8250 -2.7194 2.2932 8 6 2.9644 -2.0613 3.4812 9 6 2.6365 -0.6960 3.5701 10 6 2.7782 -0.0081 4.7944 11 1 3.0045 1.0479 4.7973 12 6 2.6257 -0.6943 6.0044 13 7 3.0929 -0.1783 7.1126 14 14 1.7554 -2.3467 6.0377 15 1 2.7606 -3.4373 5.9643 16 1 0.9798 -2.4725 7.2979 17 1 0.8336 -2.4442 4.8774 18 6 2.1643 -0.0193 2.4225 19 8 1.8426 1.2968 2.4889 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 2.2462 -2.5891 0.2376 24 1 3.0774 -3.7675 2.2287 25 1 3.3257 -2.5882 4.3520 26 1 2.9869 -0.6538 7.9514 27 1 0.9197 1.4647 2.7239 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260081635.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = -106.467563 kcal Electronic energy + Delta-G solvation = -13732.097179 eV Core-core repulsion = 11174.892802 eV Total energy + Delta-G solvation = -2557.204378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.61663 -40.36083 -37.20240 -35.77642 -33.94583 -31.70290 -29.83218 -27.00884 -24.81684 -22.58336 -22.05222 -19.19567 -18.99408 -17.54650 -17.29714 -16.52971 -16.11020 -16.01232 -15.58560 -15.09986 -14.67055 -13.95176 -13.73126 -13.42299 -13.39006 -13.06849 -12.78149 -12.49304 -12.28447 -12.13251 -11.71733 -11.57984 -11.35545 -10.71020 -9.52692 -9.31142 -8.94006 -6.52572 0.60491 0.67228 1.25460 1.38531 1.47078 2.09151 2.50096 3.28071 3.61114 3.74397 3.82368 4.11103 4.21100 4.36212 4.60607 4.73767 4.78958 4.93104 5.06316 5.17572 5.28370 5.43948 5.70031 5.75952 5.90511 6.11807 6.29197 6.56019 6.73330 7.23176 8.14038 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.044491 B = 0.010951 C = 0.009806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.187743 B = 2556.268573 C = 2854.615440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.094 0.906 4 F -0.221 7.221 5 C -0.113 4.113 6 C -0.207 4.207 7 C -0.085 4.085 8 C -0.236 4.236 9 C 0.050 3.950 10 C -0.470 4.470 11 H 0.057 0.943 12 C 0.047 3.953 13 N -0.844 5.844 14 Si 0.966 3.034 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.250 1.250 18 C 0.000 4.000 19 O -0.497 6.497 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.102 0.898 26 H 0.295 0.705 27 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -3.315 -8.184 10.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.111 0.889 4 F -0.202 7.202 5 C -0.114 4.114 6 C -0.227 4.227 7 C -0.103 4.103 8 C -0.255 4.255 9 C 0.047 3.953 10 C -0.499 4.499 11 H 0.075 0.925 12 C -0.168 4.168 13 N -0.470 5.470 14 Si 0.789 3.211 15 H -0.183 1.183 16 H -0.202 1.202 17 H -0.174 1.174 18 C -0.046 4.046 19 O -0.306 6.306 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.150 0.850 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.685 -3.178 -8.075 10.374 hybrid contribution -0.343 -0.338 0.726 0.871 sum -6.027 -3.516 -7.348 10.133 Atomic orbital electron populations 1.22250 0.91521 1.03811 1.04365 1.20296 0.96273 0.95032 0.78368 0.88864 1.92744 1.90743 1.83828 1.52867 1.20410 1.01503 0.94866 0.94571 1.20514 1.09623 0.93644 0.98870 1.20732 0.97583 0.99734 0.92274 1.20891 1.10592 0.95593 0.98438 1.18182 0.91361 0.92451 0.93279 1.19272 1.43255 0.97346 0.90001 0.92492 1.26892 0.93181 1.02390 0.94315 1.69741 1.34955 1.41149 1.01146 0.85474 0.79764 0.77448 0.78403 1.18307 1.20196 1.17376 1.18236 1.08800 0.84541 0.93015 1.84654 1.33261 1.20864 1.91860 0.90113 0.89365 0.91631 0.85651 0.85023 0.87995 0.89420 0.76392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 9.63 71.98 0.69 -3.37 15 2 C 0.14 4.42 3.91 29.85 0.12 4.54 15 3 H 0.09 2.97 7.69 -2.39 -0.02 2.95 15 4 F -0.22 -7.46 16.09 44.97 0.72 -6.74 15 5 C -0.11 -4.51 5.09 -19.80 -0.10 -4.61 15 6 C -0.21 -8.14 9.40 22.42 0.21 -7.92 15 7 C -0.09 -3.45 9.97 22.00 0.22 -3.23 15 8 C -0.24 -11.01 7.12 22.47 0.16 -10.85 15 9 C 0.05 2.55 5.11 -21.20 -0.11 2.44 15 10 C -0.47 -26.22 9.19 23.40 0.22 -26.00 15 11 H 0.06 3.51 7.90 -2.91 -0.02 3.48 15 12 C 0.05 2.50 5.40 85.25 0.46 2.96 15 13 N -0.84 -45.78 13.93 21.83 0.30 -45.47 15 14 Si 0.97 41.48 24.52 68.60 1.68 43.16 15 15 H -0.26 -10.49 6.71 99.48 0.67 -9.83 15 16 H -0.28 -11.06 7.11 99.48 0.71 -10.35 15 17 H -0.25 -10.82 6.86 99.48 0.68 -10.14 15 18 C 0.00 -0.01 6.71 23.07 0.15 0.14 15 19 O -0.50 -20.77 12.00 -89.64 -1.08 -21.85 15 20 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.13 4.36 7.47 -2.91 -0.02 4.34 15 24 H 0.13 4.38 8.06 -2.91 -0.02 4.35 15 25 H 0.10 4.71 4.74 -2.91 -0.01 4.70 15 26 H 0.30 14.29 8.30 -92.70 -0.77 13.53 15 27 H 0.38 12.50 9.06 -74.06 -0.67 11.83 15 Total: -1.00 -60.78 236.40 4.11 -56.67 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.46 Total: 20.13 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 2.02 Total: -45.90 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.30 Total: -45.47 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.08 Total: -21.85 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.72 Total: -6.74 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.68 Total: 43.16 kcal Total: -60.78 4.11 -56.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260081635.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.799 kcal (2) G-P(sol) polarization free energy of solvation -60.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds