Wall clock time and date at job start Mon Mar 30 2020 02:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 116.99967 * 2 1 4 4 C 1.38740 * 120.05378 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94449 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05474 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94444 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47060 * 4.99830 * 7 6 5 9 9 F 1.39904 * 109.47245 * 125.00014 * 7 6 5 10 10 C 1.50703 * 109.47064 * 244.99866 * 7 6 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.38272 * 120.11547 * 0.26715 * 6 5 4 19 19 C 1.38148 * 120.04740 * 359.45462 * 18 6 5 20 20 H 1.08998 * 109.47119 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47182 * 300.00063 * 1 2 3 22 22 H 1.09000 * 109.46997 * 59.99635 * 1 2 3 23 23 H 1.08001 * 120.02721 * 359.95821 * 4 3 2 24 24 H 1.07997 * 119.97287 * 180.02562 * 5 4 3 25 25 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 26 26 H 1.07994 * 119.97507 * 179.70742 * 18 6 5 27 27 H 1.08001 * 120.02458 * 180.27227 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0005 8 1 5.0633 4.8774 -0.0905 9 9 3.5235 5.7777 -1.0807 10 6 3.6798 5.7384 1.2874 11 1 3.0520 5.2706 2.0313 12 6 4.2000 6.9947 1.5156 13 7 4.9641 7.5646 0.6095 14 14 3.8207 7.8868 3.1124 15 1 4.8515 7.5474 4.1260 16 1 3.8249 9.3525 2.8735 17 1 2.4840 7.4698 3.6069 18 6 1.9212 3.6048 0.0061 19 6 1.2916 2.3751 0.0009 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 4.0209 0.3798 -0.0003 24 1 5.1346 2.5749 -0.0019 25 1 5.3297 8.4486 0.7698 26 1 1.3344 4.5114 0.0113 27 1 0.2130 2.3202 0.0016 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097281.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:16 Heat of formation + Delta-G solvation = -71.697510 kcal Electronic energy + Delta-G solvation = -13313.749291 eV Core-core repulsion = 10758.052656 eV Total energy + Delta-G solvation = -2555.696635 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.59832 -39.63730 -37.04618 -32.90692 -30.73215 -30.45053 -27.60133 -26.16758 -23.16156 -21.98623 -20.30063 -17.78523 -16.71556 -15.86569 -15.51051 -15.33407 -14.43134 -14.06142 -13.85604 -13.29171 -13.10840 -12.71628 -12.25124 -12.15848 -11.63471 -11.52816 -11.00048 -10.86279 -10.59372 -10.36138 -10.34262 -9.34542 -8.90684 -8.61185 -8.45801 -7.56695 -6.15157 -4.31746 1.88519 1.99908 3.25382 3.31585 3.35661 3.52940 4.27488 4.40176 5.10268 5.17646 5.22174 5.28920 5.41153 5.50488 5.71442 5.90620 6.01019 6.18473 6.50614 6.77924 6.81951 6.94830 7.21425 7.24451 7.75199 7.76408 7.81156 7.98893 8.74375 9.42096 10.91338 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.048301 B = 0.007918 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.556419 B = 3535.565099 C = 3743.500389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.325 6.325 3 C 0.103 3.897 4 C -0.157 4.157 5 C -0.078 4.078 6 C -0.111 4.111 7 C 0.252 3.748 8 H 0.044 0.956 9 F -0.231 7.231 10 C -0.558 4.558 11 H 0.067 0.933 12 C 0.075 3.925 13 N -0.873 5.873 14 Si 0.902 3.098 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.057 4.057 19 C -0.212 4.212 20 H 0.093 0.907 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.123 0.877 24 H 0.127 0.873 25 H 0.266 0.734 26 H 0.127 0.873 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -10.666 -0.469 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.059 3.941 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.112 4.112 7 C 0.217 3.783 8 H 0.062 0.938 9 F -0.212 7.212 10 C -0.595 4.595 11 H 0.085 0.915 12 C -0.131 4.131 13 N -0.509 5.509 14 Si 0.729 3.271 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.076 4.076 19 C -0.231 4.231 20 H 0.111 0.889 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.076 0.924 26 H 0.145 0.855 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.849 -10.665 -0.551 12.176 hybrid contribution -0.460 0.731 0.834 1.200 sum -6.309 -9.934 0.283 11.771 Atomic orbital electron populations 1.22949 0.79191 1.03133 1.01254 1.86001 1.20773 1.27577 1.89527 1.18935 0.92350 0.83691 0.99108 1.20284 0.91136 0.98234 1.07865 1.20890 0.99860 0.90914 0.97946 1.20930 0.94201 0.97129 0.98929 1.17960 0.93657 0.82572 0.84154 0.93781 1.92728 1.90876 1.78678 1.58927 1.21424 1.33693 1.02363 1.02043 0.91478 1.25088 0.93893 0.97202 0.96913 1.70004 1.31498 1.15605 1.33768 0.86443 0.79030 0.78726 0.82935 1.20303 1.20940 1.19579 1.20867 0.94604 0.96646 0.95440 1.21165 0.99358 0.92523 1.10024 0.88850 0.92912 0.92951 0.85921 0.85527 0.92435 0.85509 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 15 2 O -0.32 -4.93 10.50 -19.41 -0.20 -5.14 15 3 C 0.10 1.78 6.69 -39.21 -0.26 1.52 15 4 C -0.16 -2.72 9.99 -39.43 -0.39 -3.12 15 5 C -0.08 -1.50 9.66 -39.61 -0.38 -1.88 15 6 C -0.11 -2.47 4.99 -104.60 -0.52 -3.00 15 7 C 0.25 6.64 3.37 -29.03 -0.10 6.54 15 8 H 0.04 1.19 7.88 -51.93 -0.41 0.78 15 9 F -0.23 -6.55 16.48 2.25 0.04 -6.51 15 10 C -0.56 -15.56 8.60 -34.44 -0.30 -15.85 15 11 H 0.07 1.83 7.71 -52.49 -0.40 1.43 15 12 C 0.07 2.10 5.42 -17.82 -0.10 2.00 15 13 N -0.87 -25.72 12.95 55.43 0.72 -25.00 15 14 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 18 C -0.06 -1.18 9.28 -39.60 -0.37 -1.54 15 19 C -0.21 -3.70 9.04 -39.43 -0.36 -4.05 15 20 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.05 0.54 7.66 -51.93 -0.40 0.14 15 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 23 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 24 H 0.13 2.21 7.95 -52.49 -0.42 1.79 15 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 26 H 0.13 2.63 8.06 -52.49 -0.42 2.21 15 27 H 0.12 1.73 6.30 -52.49 -0.33 1.40 15 LS Contribution 245.37 15.07 3.70 3.70 Total: -1.00 -30.96 245.37 -5.32 -36.27 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -2.76 Total: -1.46 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.78 Total: -18.07 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.72 Total: -25.00 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.04 Total: -6.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.96 -5.32 -36.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097281.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.424 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds