Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 117.00197 * 2 1 4 4 C 1.38735 * 120.05654 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94602 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05384 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94425 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 354.99994 * 7 6 5 9 9 F 1.39904 * 109.46969 * 234.99923 * 7 6 5 10 10 C 1.50701 * 109.47064 * 114.99901 * 7 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 7 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.38265 * 120.11164 * 0.27406 * 6 5 4 19 19 C 1.38144 * 120.05603 * 359.45502 * 18 6 5 20 20 H 1.08997 * 109.47218 * 60.00400 * 1 2 3 21 21 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47127 * 299.99877 * 1 2 3 23 23 H 1.07999 * 120.02542 * 359.94572 * 4 3 2 24 24 H 1.08002 * 119.97464 * 180.02562 * 5 4 3 25 25 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 26 26 H 1.08006 * 119.97165 * 179.70552 * 18 6 5 27 27 H 1.07998 * 120.03056 * 180.28212 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0016 8 1 5.0633 4.8774 0.0884 9 9 3.5234 5.7776 1.0785 10 6 3.6798 5.7383 -1.2896 11 1 3.0520 5.2706 -2.0335 12 6 4.2000 6.9947 -1.5177 13 7 3.9322 7.6231 -2.6415 14 14 5.2852 7.8040 -0.2306 15 1 6.7037 7.4428 -0.4811 16 1 5.1290 9.2787 -0.3079 17 1 4.8858 7.3340 1.1202 18 6 1.9212 3.6047 0.0041 19 6 1.2916 2.3751 -0.0010 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0208 0.3798 -0.0001 24 1 5.1346 2.5749 -0.0019 25 1 4.2985 8.5068 -2.8022 26 1 1.3343 4.5114 0.0085 27 1 0.2130 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260097285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = -61.862007 kcal Electronic energy + Delta-G solvation = -13357.009931 eV Core-core repulsion = 10801.739795 eV Total energy + Delta-G solvation = -2555.270136 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.24709 -39.69948 -37.12723 -32.86776 -30.91090 -30.57848 -27.79011 -26.45771 -23.02401 -22.05305 -20.25242 -17.84046 -17.07681 -15.95656 -15.54770 -15.50631 -14.73947 -14.29261 -14.03124 -13.22143 -12.97878 -12.75939 -12.53109 -12.47748 -12.15499 -11.72753 -11.03303 -10.89593 -10.45316 -10.36405 -10.18347 -9.25336 -9.13206 -8.71701 -8.52465 -7.63523 -6.22665 -4.34910 1.81584 1.92028 3.27738 3.37655 3.48648 3.51832 4.25823 4.37190 5.07124 5.11284 5.20371 5.24147 5.35490 5.48040 5.54745 5.82535 5.89749 6.09586 6.26692 6.47394 6.69427 6.81543 6.96069 7.15306 7.35037 7.47710 7.71042 8.28817 8.79053 9.36400 10.88090 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.007954 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.744538 B = 3519.362426 C = 3629.256474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.107 3.893 4 C -0.156 4.156 5 C -0.078 4.078 6 C -0.107 4.107 7 C 0.218 3.782 8 H 0.044 0.956 9 F -0.236 7.236 10 C -0.553 4.553 11 H 0.084 0.916 12 C 0.085 3.915 13 N -0.884 5.884 14 Si 0.866 3.134 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.238 1.238 18 C -0.053 4.053 19 C -0.211 4.211 20 H 0.053 0.947 21 H 0.094 0.906 22 H 0.052 0.948 23 H 0.124 0.876 24 H 0.127 0.873 25 H 0.268 0.732 26 H 0.129 0.871 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 -11.255 5.827 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.063 3.937 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.108 4.108 7 C 0.182 3.818 8 H 0.062 0.938 9 F -0.217 7.217 10 C -0.591 4.591 11 H 0.102 0.898 12 C -0.120 4.120 13 N -0.520 5.520 14 Si 0.691 3.309 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.161 1.161 18 C -0.071 4.071 19 C -0.230 4.230 20 H 0.072 0.928 21 H 0.112 0.888 22 H 0.071 0.929 23 H 0.142 0.858 24 H 0.145 0.855 25 H 0.078 0.922 26 H 0.147 0.853 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.635 -11.254 5.748 13.149 hybrid contribution 0.234 0.738 0.384 0.865 sum -3.400 -10.515 6.132 12.639 Atomic orbital electron populations 1.22965 0.79064 1.03228 1.01328 1.86004 1.20882 1.27495 1.89417 1.18953 0.92355 0.83756 0.98624 1.20265 0.91172 0.98205 1.07849 1.20859 0.99791 0.90948 0.97974 1.20482 0.94200 0.96013 1.00074 1.18448 0.93788 0.85003 0.84535 0.93839 1.92748 1.91131 1.78247 1.59560 1.21238 1.34435 1.02449 1.00940 0.89781 1.24987 0.95118 0.96646 0.95267 1.69907 1.43613 1.14175 1.24309 0.87150 0.80349 0.78869 0.84517 1.20460 1.21183 1.16068 1.20855 0.94437 0.96855 0.94924 1.21173 0.99506 0.92427 1.09849 0.92793 0.88780 0.92918 0.85785 0.85500 0.92223 0.85302 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 15 2 O -0.32 -4.81 10.50 -19.41 -0.20 -5.02 15 3 C 0.11 1.81 6.69 -39.22 -0.26 1.54 15 4 C -0.16 -2.62 9.99 -39.43 -0.39 -3.02 15 5 C -0.08 -1.42 9.66 -39.61 -0.38 -1.81 15 6 C -0.11 -2.28 4.99 -104.60 -0.52 -2.81 15 7 C 0.22 5.32 2.82 -29.03 -0.08 5.24 15 8 H 0.04 1.01 7.31 -51.93 -0.38 0.63 15 9 F -0.24 -5.95 14.05 2.25 0.03 -5.92 15 10 C -0.55 -15.61 9.19 -34.44 -0.32 -15.92 15 11 H 0.08 2.56 7.97 -52.49 -0.42 2.14 15 12 C 0.09 2.45 5.47 -17.82 -0.10 2.35 15 13 N -0.88 -26.72 13.96 55.43 0.77 -25.95 15 14 Si 0.87 21.37 27.07 -169.99 -4.60 16.77 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 17 H -0.24 -5.78 5.49 56.52 0.31 -5.47 15 18 C -0.05 -1.05 9.29 -39.61 -0.37 -1.42 15 19 C -0.21 -3.60 9.04 -39.43 -0.36 -3.96 15 20 H 0.05 0.54 7.66 -51.93 -0.40 0.15 15 21 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 15 23 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 24 H 0.13 2.05 7.95 -52.49 -0.42 1.63 15 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 26 H 0.13 2.63 8.06 -52.48 -0.42 2.20 15 27 H 0.12 1.73 6.30 -52.49 -0.33 1.40 15 LS Contribution 239.64 15.07 3.61 3.61 Total: -1.00 -31.20 239.64 -5.01 -36.21 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.84 Total: -1.21 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.79 Total: -18.50 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.03 Total: -5.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.60 Total: 16.77 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.20 -5.01 -36.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.650 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds