Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35894 * 117.00197 * 2 1 4 4 C 1.38735 * 120.05654 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94602 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05384 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94425 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47152 * 354.99994 * 7 6 5 9 9 F 1.39904 * 109.46969 * 234.99923 * 7 6 5 10 10 C 1.50701 * 109.47064 * 114.99901 * 7 6 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 7 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.38265 * 120.11164 * 0.27406 * 6 5 4 19 19 C 1.38144 * 120.05603 * 359.45502 * 18 6 5 20 20 H 1.08997 * 109.47218 * 60.00400 * 1 2 3 21 21 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47127 * 299.99877 * 1 2 3 23 23 H 1.07999 * 120.02542 * 359.94572 * 4 3 2 24 24 H 1.08002 * 119.97464 * 180.02562 * 5 4 3 25 25 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 26 26 H 1.08006 * 119.97165 * 179.70552 * 18 6 5 27 27 H 1.07998 * 120.03056 * 180.28212 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0016 8 1 5.0633 4.8774 0.0884 9 9 3.5234 5.7776 1.0785 10 6 3.6798 5.7383 -1.2896 11 1 3.0520 5.2706 -2.0335 12 6 4.2000 6.9947 -1.5177 13 7 3.9322 7.6231 -2.6415 14 14 5.2852 7.8040 -0.2306 15 1 6.7037 7.4428 -0.4811 16 1 5.1290 9.2787 -0.3079 17 1 4.8858 7.3340 1.1202 18 6 1.9212 3.6047 0.0041 19 6 1.2916 2.3751 -0.0010 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0208 0.3798 -0.0001 24 1 5.1346 2.5749 -0.0019 25 1 4.2985 8.5068 -2.8022 26 1 1.3343 4.5114 0.0085 27 1 0.2130 2.3201 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260097285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = -81.570944 kcal Electronic energy + Delta-G solvation = -13357.864575 eV Core-core repulsion = 10801.739795 eV Total energy + Delta-G solvation = -2556.124779 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.21762 -40.96530 -38.43770 -34.99190 -32.53352 -31.98446 -29.24184 -27.84380 -24.78356 -23.44403 -21.84124 -19.21533 -19.05278 -17.52589 -17.15710 -16.61809 -16.53273 -15.99222 -15.45918 -14.87600 -14.60741 -14.50180 -14.26728 -13.99729 -13.50364 -12.97857 -12.74956 -12.60840 -12.02439 -11.92078 -11.75438 -11.17841 -11.16270 -10.86108 -9.91487 -9.04655 -8.43015 -6.60771 0.42785 0.47966 1.33198 1.38644 1.56296 2.30748 2.40170 2.81444 2.94935 3.88436 3.90222 3.97800 4.30778 4.36496 4.42002 4.53204 4.57602 4.71801 4.76235 4.99069 5.17878 5.27964 5.33926 5.41415 5.79474 5.86109 6.10897 6.47332 6.51133 7.14356 8.71304 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.007954 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.744538 B = 3519.362426 C = 3629.256474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.114 3.886 4 C -0.155 4.155 5 C -0.077 4.077 6 C -0.143 4.143 7 C 0.220 3.780 8 H 0.059 0.941 9 F -0.242 7.242 10 C -0.560 4.560 11 H 0.045 0.955 12 C 0.029 3.971 13 N -0.930 5.930 14 Si 0.932 3.068 15 H -0.261 1.261 16 H -0.283 1.283 17 H -0.232 1.232 18 C -0.073 4.073 19 C -0.208 4.208 20 H 0.058 0.942 21 H 0.125 0.875 22 H 0.062 0.938 23 H 0.154 0.846 24 H 0.147 0.853 25 H 0.272 0.728 26 H 0.111 0.889 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 -12.983 7.091 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.069 3.931 4 C -0.173 4.173 5 C -0.095 4.095 6 C -0.144 4.144 7 C 0.183 3.817 8 H 0.077 0.923 9 F -0.223 7.223 10 C -0.597 4.597 11 H 0.063 0.937 12 C -0.172 4.172 13 N -0.567 5.567 14 Si 0.754 3.246 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.155 1.155 18 C -0.091 4.091 19 C -0.227 4.227 20 H 0.077 0.923 21 H 0.143 0.857 22 H 0.081 0.919 23 H 0.171 0.829 24 H 0.165 0.835 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.300 -13.006 7.014 15.140 hybrid contribution -0.021 1.126 -0.061 1.128 sum -3.321 -11.880 6.953 14.160 Atomic orbital electron populations 1.23340 0.76688 1.05642 1.02034 1.86016 1.23294 1.26144 1.88832 1.19116 0.92706 0.84363 0.96947 1.20589 0.91651 0.98583 1.06519 1.21058 1.00770 0.90510 0.97204 1.20362 0.94922 0.95467 1.03628 1.18392 0.94932 0.86045 0.82289 0.92311 1.92712 1.91343 1.78702 1.59544 1.21445 1.33464 1.02831 1.01977 0.93710 1.25901 0.96634 0.97313 0.97322 1.70031 1.45368 1.14899 1.26435 0.86108 0.79079 0.77715 0.81744 1.18608 1.20873 1.15455 1.20833 0.94246 0.97577 0.96454 1.21352 1.00975 0.91422 1.08938 0.92345 0.85671 0.91909 0.82869 0.83497 0.91867 0.87118 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 15 2 O -0.33 -8.68 10.50 -92.36 -0.97 -9.65 15 3 C 0.11 3.55 6.69 22.51 0.15 3.70 15 4 C -0.16 -4.79 9.99 22.37 0.22 -4.57 15 5 C -0.08 -2.72 9.66 22.25 0.22 -2.51 15 6 C -0.14 -6.10 4.99 -19.85 -0.10 -6.20 15 7 C 0.22 10.71 2.82 29.10 0.08 10.79 15 8 H 0.06 2.67 7.31 -2.39 -0.02 2.65 15 9 F -0.24 -12.15 14.05 44.97 0.63 -11.52 15 10 C -0.56 -32.47 9.19 25.60 0.24 -32.23 15 11 H 0.04 2.87 7.97 -2.91 -0.02 2.84 15 12 C 0.03 1.70 5.47 84.66 0.46 2.16 15 13 N -0.93 -57.63 13.96 21.45 0.30 -57.33 15 14 Si 0.93 44.13 27.07 68.60 1.86 45.99 15 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 15 16 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 17 H -0.23 -10.69 5.49 99.48 0.55 -10.15 15 18 C -0.07 -2.95 9.29 22.25 0.21 -2.74 15 19 C -0.21 -6.83 9.04 22.37 0.20 -6.63 15 20 H 0.06 1.00 7.66 -2.39 -0.02 0.98 15 21 H 0.13 1.44 8.14 -2.39 -0.02 1.43 15 22 H 0.06 1.00 7.66 -2.39 -0.02 0.99 15 23 H 0.15 3.80 8.06 -2.91 -0.02 3.77 15 24 H 0.15 4.42 7.95 -2.91 -0.02 4.40 15 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 15 26 H 0.11 4.73 8.06 -2.91 -0.02 4.71 15 27 H 0.15 3.91 6.30 -2.91 -0.02 3.89 15 Total: -1.00 -67.89 239.64 5.61 -62.28 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.00 Total: 7.04 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 2.79 Total: -36.82 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.30 Total: -57.33 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.97 Total: -9.65 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 0.63 Total: -11.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.86 Total: 45.99 kcal Total: -67.89 5.61 -62.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260097285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds