Wall clock time and date at job start Mon Mar 30 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35907 * 117.00072 * 2 1 4 4 C 1.38745 * 120.05174 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94378 * 179.97438 * 4 3 2 6 6 C 1.38299 * 120.05244 * 359.75248 * 5 4 3 7 7 C 1.38233 * 120.11014 * 0.50591 * 6 5 4 8 8 C 1.50700 * 119.97327 * 179.76595 * 7 6 5 9 9 H 1.08994 * 109.47551 * 184.72159 * 8 7 6 10 10 F 1.39898 * 109.47099 * 304.72464 * 8 7 6 11 11 C 1.50702 * 109.46869 * 64.72213 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.38165 * 120.05926 * 359.49174 * 7 6 5 20 20 H 1.09005 * 109.46799 * 60.00126 * 1 2 3 21 21 H 1.09002 * 109.46704 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47141 * 300.00049 * 1 2 3 23 23 H 1.07996 * 120.03086 * 0.02562 * 4 3 2 24 24 H 1.07995 * 119.97917 * 180.02562 * 5 4 3 25 25 H 1.07999 * 119.94067 * 180.27084 * 6 5 4 26 26 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 27 27 H 1.07996 * 120.03309 * 180.28005 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0062 7 6 4.0559 2.5172 0.0003 8 6 5.5608 2.5982 0.0007 9 1 5.9787 1.5956 -0.0890 10 9 5.9859 3.3790 -1.0795 11 6 6.0298 3.2245 1.2886 12 1 5.3102 3.5327 2.0327 13 6 7.3779 3.3985 1.5198 14 7 8.2542 3.0229 0.6139 15 14 7.9595 4.1678 3.1195 16 1 7.5039 3.3368 4.2628 17 1 9.4427 4.2432 3.1219 18 1 7.3946 5.5353 3.2454 19 6 3.4312 1.2848 -0.0002 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.2128 2.3203 0.0014 24 1 1.3340 4.5113 0.0019 25 1 3.7922 4.6380 0.0111 26 1 9.2026 3.1456 0.7763 27 1 4.0206 0.3800 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260193040.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:19 Heat of formation + Delta-G solvation = -71.246481 kcal Electronic energy + Delta-G solvation = -13341.996878 eV Core-core repulsion = 10786.319801 eV Total energy + Delta-G solvation = -2555.677077 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.62751 -39.62993 -37.02023 -32.96594 -31.17072 -29.90664 -27.19718 -26.66816 -23.22635 -22.01864 -20.27950 -17.41255 -16.68315 -15.84415 -15.49654 -15.39447 -14.84444 -14.13269 -13.84899 -13.29457 -13.03616 -12.82932 -12.23523 -12.02095 -11.53371 -11.24602 -10.96955 -10.85486 -10.63096 -10.61458 -10.35604 -9.35635 -8.99040 -8.61922 -8.22295 -7.68877 -6.15489 -4.32108 1.88680 2.00449 3.28116 3.31925 3.34847 3.54578 4.27998 4.40606 5.08011 5.18044 5.21340 5.27680 5.34219 5.49988 5.76777 5.96146 5.98969 6.16931 6.50505 6.74147 6.84588 6.96886 7.19607 7.26967 7.73608 7.78102 7.81820 7.96109 8.73705 9.41542 10.91388 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.046453 B = 0.007963 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.621022 B = 3515.317656 C = 3557.003754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.223 4.223 5 C -0.092 4.092 6 C -0.129 4.129 7 C -0.040 4.040 8 C 0.250 3.750 9 H 0.047 0.953 10 F -0.228 7.228 11 C -0.558 4.558 12 H 0.068 0.932 13 C 0.075 3.925 14 N -0.873 5.873 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.144 4.144 20 H 0.051 0.949 21 H 0.094 0.906 22 H 0.051 0.949 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.267 0.733 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 -2.485 -0.429 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.069 3.931 4 C -0.242 4.242 5 C -0.110 4.110 6 C -0.147 4.147 7 C -0.041 4.041 8 C 0.214 3.786 9 H 0.065 0.935 10 F -0.209 7.209 11 C -0.596 4.596 12 H 0.086 0.914 13 C -0.131 4.131 14 N -0.508 5.508 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.163 4.163 20 H 0.069 0.931 21 H 0.112 0.888 22 H 0.070 0.930 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.077 0.923 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.262 -2.674 -0.512 12.561 hybrid contribution 0.078 0.574 0.825 1.008 sum -12.184 -2.100 0.313 12.368 Atomic orbital electron populations 1.22944 0.79313 1.03201 1.01016 1.86046 1.20643 1.27530 1.89348 1.18950 0.92243 0.83703 0.98159 1.21017 0.99095 0.92604 1.11459 1.20871 0.94703 0.96484 0.98933 1.21004 0.92904 0.99125 1.01710 1.20830 0.98592 0.91776 0.92889 1.18024 0.83672 0.92468 0.84400 0.93512 1.92737 1.91168 1.78227 1.58811 1.21349 0.92425 1.43910 1.01902 0.91386 1.25082 0.96593 0.94365 0.97010 1.69998 1.02073 1.44878 1.33856 0.86475 0.77520 0.79964 0.83007 1.19862 1.21011 1.19848 1.20334 0.90836 0.98543 1.06588 0.93060 0.88802 0.93022 0.86380 0.86452 0.85554 0.92330 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.32 -5.16 10.50 -19.45 -0.20 -5.37 15 3 C 0.11 2.05 6.69 -39.22 -0.26 1.79 15 4 C -0.22 -3.62 9.04 -39.44 -0.36 -3.97 15 5 C -0.09 -1.56 10.04 -39.60 -0.40 -1.96 15 6 C -0.13 -2.66 9.28 -39.56 -0.37 -3.02 15 7 C -0.04 -0.91 4.99 -104.65 -0.52 -1.43 15 8 C 0.25 6.65 3.37 -29.03 -0.10 6.56 15 9 H 0.05 1.28 7.88 -51.93 -0.41 0.88 15 10 F -0.23 -6.50 16.49 2.25 0.04 -6.47 15 11 C -0.56 -15.66 8.60 -34.44 -0.30 -15.96 15 12 H 0.07 1.86 7.71 -52.49 -0.40 1.45 15 13 C 0.08 2.12 5.42 -17.82 -0.10 2.03 15 14 N -0.87 -25.78 12.96 55.43 0.72 -25.06 15 15 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 19 C -0.14 -2.96 9.61 -39.43 -0.38 -3.34 15 20 H 0.05 0.50 7.66 -51.93 -0.40 0.10 15 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.05 0.51 7.66 -51.93 -0.40 0.11 15 23 H 0.12 1.52 6.30 -52.49 -0.33 1.19 15 24 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 25 H 0.13 2.63 8.06 -52.49 -0.42 2.21 15 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 27 H 0.13 2.51 7.95 -52.49 -0.42 2.09 15 LS Contribution 245.39 15.07 3.70 3.70 Total: -1.00 -30.99 245.39 -5.32 -36.31 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -2.76 Total: -1.39 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.78 Total: -17.99 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.72 Total: -25.06 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.04 Total: -6.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.99 -5.32 -36.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193040.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds