Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46968 * 240.00055 * 3 2 1 5 5 H 1.48497 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47142 * 119.99714 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.38627 * 120.80136 * 264.72177 * 13 10 9 15 15 C 1.38192 * 119.19331 * 179.79936 * 14 13 10 16 16 N 1.31875 * 120.81805 * 0.48617 * 15 14 13 17 17 C 1.31845 * 121.75204 * 359.74289 * 16 15 14 18 18 C 1.38461 * 120.72338 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.44645 * 180.02562 * 18 17 16 20 20 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 22 22 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 23 23 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 24 24 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 25 25 H 1.08000 * 120.40532 * 0.02562 * 14 13 10 26 26 H 1.07996 * 119.58863 * 180.20465 * 15 14 13 27 27 H 1.08002 * 119.63753 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1593 -5.6979 1.0067 15 6 0.4683 -6.8851 0.8559 16 7 0.1375 -7.3268 -0.3418 17 6 0.4441 -6.6593 -1.4366 18 6 1.1316 -5.4596 -1.3645 19 9 1.4424 -4.7799 -2.4899 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 3.5701 -2.8178 1.3336 24 1 2.3962 -3.7498 2.0540 25 1 1.4305 -5.3445 1.9906 26 1 0.1998 -7.4604 1.7295 27 1 0.1559 -7.0526 -2.4003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198529.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -22.552377 kcal Electronic energy + Delta-G solvation = -13453.460738 eV Core-core repulsion = 10932.187947 eV Total energy + Delta-G solvation = -2521.272791 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.55313 -39.80772 -36.07530 -32.75383 -31.00581 -30.61244 -28.16190 -25.23982 -23.11032 -22.68760 -20.14422 -17.47632 -17.10693 -16.58045 -15.89312 -15.40297 -14.67213 -14.56879 -13.82469 -13.44856 -13.38359 -13.18638 -12.63753 -12.30906 -11.75764 -11.71725 -11.04795 -10.83201 -10.49245 -10.13795 -9.51428 -9.27478 -9.14137 -8.70162 -8.52164 -7.92509 -6.15277 -4.20940 1.20331 1.41740 3.24294 3.29730 3.31440 3.90408 4.32704 4.35570 4.64084 4.89539 5.01060 5.18462 5.20335 5.46176 5.72460 5.92386 6.10476 6.18423 6.48664 6.53361 6.90516 7.31942 7.42411 7.75738 7.84569 8.02341 8.05862 8.19411 8.84436 9.44791 10.95468 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.008221 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.037926 B = 3405.297750 C = 3571.489064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.004 3.996 10 C 0.123 3.877 11 H 0.086 0.914 12 N -0.838 5.838 13 C -0.043 4.043 14 C -0.134 4.134 15 C 0.080 3.920 16 N -0.473 5.473 17 C 0.066 3.934 18 C 0.048 3.952 19 F -0.127 7.127 20 H 0.263 0.737 21 H 0.021 0.979 22 H 0.019 0.981 23 H 0.352 0.648 24 H 0.330 0.670 25 H 0.143 0.857 26 H 0.158 0.842 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -9.706 1.141 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.035 4.035 10 C 0.012 3.988 11 H 0.104 0.896 12 N -0.368 5.368 13 C -0.052 4.052 14 C -0.154 4.154 15 C -0.076 4.076 16 N -0.182 5.182 17 C -0.092 4.092 18 C 0.026 3.974 19 F -0.105 7.105 20 H 0.073 0.927 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.166 0.834 24 H 0.142 0.858 25 H 0.161 0.839 26 H 0.175 0.825 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.746 -11.003 0.744 11.165 hybrid contribution 0.275 2.822 0.041 2.836 sum 2.021 -8.180 0.785 8.463 Atomic orbital electron populations 1.69955 1.06165 1.27071 1.49631 1.25012 0.94846 0.99404 0.94818 0.86595 0.79544 0.82791 0.78739 1.20093 1.21220 1.20104 1.21047 0.92870 0.90547 1.52223 0.92402 1.19765 0.94234 0.91426 0.98044 1.20522 0.95030 0.89567 0.93716 0.89565 1.59266 1.27728 1.46267 1.03490 1.20806 0.95762 0.97151 0.91448 1.21895 0.98630 0.95325 0.99598 1.22721 0.95506 0.94347 0.95074 1.67639 1.19160 1.32936 0.98453 1.22741 0.96860 0.91120 0.98463 1.18679 1.02220 0.93517 0.82969 1.91518 1.90940 1.79187 1.48894 0.92695 0.96030 0.96287 0.83404 0.85796 0.83942 0.82470 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.53 -14.13 8.55 -34.44 -0.29 -14.42 15 8 H 0.06 1.48 7.14 -52.49 -0.38 1.10 15 9 C 0.00 0.10 4.60 -27.88 -0.13 -0.03 15 10 C 0.12 2.49 2.82 -68.86 -0.19 2.30 15 11 H 0.09 1.84 7.88 -51.93 -0.41 1.43 15 12 N -0.84 -14.84 8.81 -5.65 -0.05 -14.89 15 13 C -0.04 -0.77 5.10 -104.26 -0.53 -1.31 15 14 C -0.13 -2.07 9.34 -39.45 -0.37 -2.44 15 15 C 0.08 1.13 11.18 -17.55 -0.20 0.93 15 16 N -0.47 -7.33 10.36 -13.20 -0.14 -7.47 15 17 C 0.07 1.03 11.17 -17.46 -0.20 0.83 15 18 C 0.05 0.86 7.29 -39.28 -0.29 0.57 15 19 F -0.13 -2.39 16.70 2.25 0.04 -2.35 15 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.02 0.50 8.14 -51.93 -0.42 0.07 15 23 H 0.35 6.37 7.90 -39.29 -0.31 6.06 15 24 H 0.33 5.41 7.30 -39.29 -0.29 5.12 15 25 H 0.14 1.93 6.42 -52.49 -0.34 1.59 15 26 H 0.16 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.16 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 242.88 15.07 3.66 3.66 Total: -1.00 -29.60 242.88 -5.61 -35.21 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.54 Total: 7.19 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.29 Total: -11.96 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.55 Total: -47.70 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.60 -5.61 -35.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198529.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds