Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46968 * 240.00055 * 3 2 1 5 5 H 1.48497 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47142 * 119.99714 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.38627 * 120.80136 * 264.72177 * 13 10 9 15 15 C 1.38192 * 119.19331 * 179.79936 * 14 13 10 16 16 N 1.31875 * 120.81805 * 0.48617 * 15 14 13 17 17 C 1.31845 * 121.75204 * 359.74289 * 16 15 14 18 18 C 1.38461 * 120.72338 * 0.02562 * 17 16 15 19 19 F 1.35102 * 120.44645 * 180.02562 * 18 17 16 20 20 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 22 22 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 23 23 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 24 24 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 25 25 H 1.08000 * 120.40532 * 0.02562 * 14 13 10 26 26 H 1.07996 * 119.58863 * 180.20465 * 15 14 13 27 27 H 1.08002 * 119.63753 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1593 -5.6979 1.0067 15 6 0.4683 -6.8851 0.8559 16 7 0.1375 -7.3268 -0.3418 17 6 0.4441 -6.6593 -1.4366 18 6 1.1316 -5.4596 -1.3645 19 9 1.4424 -4.7799 -2.4899 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5575 -0.8880 22 1 0.6248 -2.5563 0.8920 23 1 3.5701 -2.8178 1.3336 24 1 2.3962 -3.7498 2.0540 25 1 1.4305 -5.3445 1.9906 26 1 0.1998 -7.4604 1.7295 27 1 0.1559 -7.0526 -2.4003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198529.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = -43.213254 kcal Electronic energy + Delta-G solvation = -13454.356661 eV Core-core repulsion = 10932.187947 eV Total energy + Delta-G solvation = -2522.168714 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.95545 -41.07105 -37.67917 -34.74766 -32.41682 -31.84716 -30.02983 -26.92159 -24.52368 -24.24876 -21.73562 -19.08663 -18.48446 -18.21633 -17.30685 -16.87300 -16.56069 -15.98358 -15.24116 -14.90835 -14.71393 -14.65206 -14.27978 -14.17450 -13.48886 -13.13307 -12.81254 -12.62340 -12.29920 -12.05834 -11.39163 -10.68049 -10.61419 -10.54455 -9.95213 -9.51760 -8.26780 -6.39827 -0.02799 0.10815 1.38820 1.41149 1.48899 2.35820 2.67799 3.06491 3.10110 3.41320 3.58392 3.78536 3.92256 4.03446 4.41120 4.52883 4.71206 4.82886 4.87866 5.11648 5.27726 5.44572 5.65895 5.68287 6.07111 6.24141 6.62313 6.75115 6.81660 7.30867 8.84565 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.047767 B = 0.008221 C = 0.007838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.037926 B = 3405.297750 C = 3571.489064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.014 3.986 10 C 0.138 3.862 11 H 0.070 0.930 12 N -0.822 5.822 13 C -0.068 4.068 14 C -0.134 4.134 15 C 0.092 3.908 16 N -0.479 5.479 17 C 0.074 3.926 18 C 0.022 3.978 19 F -0.141 7.141 20 H 0.264 0.736 21 H -0.018 1.018 22 H -0.001 1.001 23 H 0.351 0.649 24 H 0.340 0.660 25 H 0.162 0.838 26 H 0.200 0.800 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -10.486 2.125 11.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.024 4.024 10 C 0.026 3.974 11 H 0.088 0.912 12 N -0.352 5.352 13 C -0.077 4.077 14 C -0.154 4.154 15 C -0.064 4.064 16 N -0.188 5.188 17 C -0.084 4.084 18 C 0.000 4.000 19 F -0.120 7.120 20 H 0.073 0.927 21 H 0.001 0.999 22 H 0.017 0.983 23 H 0.164 0.836 24 H 0.153 0.847 25 H 0.179 0.821 26 H 0.217 0.783 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.428 -11.802 1.737 12.173 hybrid contribution 0.029 2.977 -0.235 2.987 sum 2.457 -8.824 1.502 9.282 Atomic orbital electron populations 1.70097 1.07969 1.27987 1.51035 1.25955 0.95643 1.03394 0.94401 0.85475 0.78187 0.77933 0.79310 1.19546 1.21246 1.18512 1.21475 0.93547 0.91451 1.51343 0.91407 1.19608 0.94397 0.93338 0.95095 1.20116 0.93728 0.89271 0.94300 0.91208 1.59244 1.27179 1.45908 1.02875 1.20781 0.97070 0.96971 0.92908 1.22157 0.98297 0.95513 0.99425 1.23386 0.93457 0.93686 0.95918 1.67775 1.19199 1.32891 0.98909 1.23126 0.95494 0.89971 0.99817 1.19003 1.03747 0.94692 0.82548 1.91473 1.91286 1.79699 1.49562 0.92719 0.99943 0.98274 0.83563 0.84689 0.82092 0.78287 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.44 0.28 -55.42 15 2 C 0.00 0.26 5.46 84.65 0.46 0.72 15 3 Si 0.97 42.97 29.54 68.60 2.03 45.00 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 15 7 C -0.54 -29.18 8.55 25.60 0.22 -28.96 15 8 H 0.07 3.44 7.14 -2.91 -0.02 3.42 15 9 C 0.01 0.74 4.60 29.85 0.14 0.88 15 10 C 0.14 5.64 2.82 44.17 0.12 5.76 15 11 H 0.07 3.05 7.88 -2.39 -0.02 3.03 15 12 N -0.82 -28.38 8.81 -171.79 -1.51 -29.89 15 13 C -0.07 -2.47 5.10 -19.63 -0.10 -2.57 15 14 C -0.13 -3.87 9.34 22.35 0.21 -3.66 15 15 C 0.09 2.30 11.18 84.68 0.95 3.24 15 16 N -0.48 -13.60 10.36 -195.67 -2.03 -15.63 15 17 C 0.07 2.17 11.17 84.74 0.95 3.12 15 18 C 0.02 0.78 7.29 22.47 0.16 0.94 15 19 F -0.14 -5.49 16.70 44.97 0.75 -4.74 15 20 H 0.26 14.94 8.31 -92.71 -0.77 14.17 15 21 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 15 22 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 15 23 H 0.35 12.36 7.90 -89.69 -0.71 11.65 15 24 H 0.34 10.67 7.30 -89.70 -0.65 10.01 15 25 H 0.16 3.94 6.42 -2.91 -0.02 3.92 15 26 H 0.20 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.19 4.34 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -64.23 242.88 2.47 -61.76 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.16 Total: 19.43 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.11 Total: -20.52 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.26 Total: -100.93 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.75 Total: -4.74 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.23 2.47 -61.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198529.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.545 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds