Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38264 * 119.95219 * 2 1 4 4 C 1.38255 * 120.12693 * 180.02562 * 3 2 1 5 5 C 1.38335 * 120.02797 * 0.02562 * 4 3 2 6 6 F 1.35104 * 120.04697 * 180.02562 * 5 4 3 7 7 C 1.38915 * 119.90390 * 359.72516 * 5 4 3 8 8 O 1.35961 * 120.05972 * 180.29711 * 7 5 4 9 9 C 1.38176 * 119.95233 * 179.97438 * 2 1 3 10 10 C 1.50700 * 120.01702 * 359.96536 * 9 2 1 11 11 C 1.50702 * 109.46869 * 90.00306 * 10 9 2 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 H 1.09006 * 109.46361 * 270.01282 * 1 2 3 20 20 H 1.08994 * 109.47355 * 30.01480 * 1 2 3 21 21 H 1.08993 * 109.47191 * 150.02474 * 1 2 3 22 22 H 1.07997 * 119.93584 * 359.97438 * 3 2 1 23 23 H 1.07995 * 119.98826 * 180.02562 * 4 3 2 24 24 H 0.96695 * 113.99502 * 270.23004 * 8 7 5 25 25 H 1.09004 * 109.47210 * 330.00599 * 10 9 2 26 26 H 1.08994 * 109.47551 * 210.00252 * 10 9 2 27 27 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1980 0.0000 4 6 3.5799 1.2022 -0.0005 5 6 4.2758 0.0066 -0.0016 6 9 5.6269 0.0103 -0.0016 7 6 3.5835 -1.1977 0.0036 8 8 4.2643 -2.3746 0.0087 9 6 2.1969 -1.1972 0.0005 10 6 1.4427 -2.5019 0.0019 11 6 1.1907 -2.9379 -1.4185 12 1 1.5419 -2.3311 -2.2400 13 6 0.5171 -4.1146 -1.6693 14 7 0.0898 -4.8536 -0.6689 15 14 0.2115 -4.6588 -3.4298 16 1 1.3451 -5.4993 -3.8920 17 1 -1.0463 -5.4457 -3.4934 18 1 0.0926 -3.4641 -4.3038 19 1 -0.3632 0.0002 1.0278 20 1 -0.3634 0.8898 -0.5140 21 1 -0.3633 -0.8901 -0.5134 22 1 1.6556 2.1322 -0.0004 23 1 4.1168 2.1392 -0.0001 24 1 4.4642 -2.7170 -0.8732 25 1 0.4906 -2.3707 0.5161 26 1 2.0316 -3.2615 0.5160 27 1 -0.3844 -5.6813 -0.8453 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260200890.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = -101.178474 kcal Electronic energy + Delta-G solvation = -13584.622326 eV Core-core repulsion = 11027.647300 eV Total energy + Delta-G solvation = -2556.975026 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.84065 -40.71647 -37.80409 -35.48945 -33.46538 -31.82211 -29.05243 -27.39428 -25.33138 -22.95086 -21.87300 -19.15126 -18.45442 -18.04611 -17.68353 -16.76627 -16.47651 -15.83945 -15.05942 -14.92232 -14.60057 -14.39304 -13.95966 -13.54041 -13.23528 -12.86699 -12.77979 -12.44248 -12.31370 -12.25800 -11.88688 -11.53605 -11.13756 -10.59081 -9.52074 -9.30937 -8.19110 -6.32129 0.17024 0.33411 1.41333 1.41688 1.52769 2.38604 2.60617 3.11936 3.16163 3.47274 3.91206 4.06116 4.31845 4.37573 4.72356 4.91514 4.96920 5.07102 5.14203 5.18535 5.34832 5.42545 5.55940 5.74703 5.88249 5.96683 6.16639 6.77411 6.80191 7.36289 8.90626 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.035030 B = 0.010210 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.133867 B = 2741.676127 C = 3127.381576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.090 4.090 4 C -0.146 4.146 5 C 0.046 3.954 6 F -0.146 7.146 7 C 0.050 3.950 8 O -0.501 6.501 9 C -0.071 4.071 10 C 0.064 3.936 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.009 3.991 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.264 1.264 19 H 0.074 0.926 20 H 0.092 0.908 21 H 0.055 0.945 22 H 0.172 0.828 23 H 0.168 0.832 24 H 0.398 0.602 25 H 0.018 0.982 26 H -0.001 1.001 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 11.796 -0.989 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.164 4.164 5 C 0.026 3.974 6 F -0.125 7.125 7 C 0.004 3.996 8 O -0.313 6.313 9 C -0.072 4.072 10 C 0.027 3.973 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.787 3.213 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.188 1.188 19 H 0.093 0.907 20 H 0.111 0.889 21 H 0.074 0.926 22 H 0.190 0.810 23 H 0.186 0.814 24 H 0.255 0.745 25 H 0.036 0.964 26 H 0.017 0.983 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.117 11.688 -0.340 12.101 hybrid contribution 0.245 -1.132 -1.112 1.606 sum 3.362 10.556 -1.452 11.174 Atomic orbital electron populations 1.20805 0.89826 1.03500 1.02637 1.20088 0.97679 0.91804 0.99661 1.21243 0.92850 0.98270 0.98447 1.21264 0.95109 0.96433 1.03614 1.18287 0.76740 0.94625 1.07745 1.91418 1.29186 1.97451 1.94397 1.18530 0.90257 0.84806 1.05971 1.84717 1.75673 1.36252 1.34615 1.20641 0.92357 0.97760 0.96428 1.17968 0.93772 0.88766 0.96789 1.21208 1.36325 1.06363 0.91862 0.92695 1.25862 0.95286 0.96459 1.01377 1.70088 1.39118 1.14612 1.33019 0.85485 0.77700 0.78510 0.79599 1.20018 1.20724 1.18774 0.90719 0.88919 0.92623 0.81034 0.81430 0.74489 0.96420 0.98267 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.59 9.19 71.24 0.65 -2.93 15 2 C -0.09 -3.27 5.88 -19.87 -0.12 -3.39 15 3 C -0.09 -2.46 9.69 22.28 0.22 -2.25 15 4 C -0.15 -4.07 10.02 22.30 0.22 -3.84 15 5 C 0.05 1.62 7.31 22.46 0.16 1.79 15 6 F -0.15 -5.13 17.11 44.97 0.77 -4.36 15 7 C 0.05 2.09 6.68 22.53 0.15 2.24 15 8 O -0.50 -21.52 12.41 -93.11 -1.16 -22.67 15 9 C -0.07 -3.12 5.08 -19.78 -0.10 -3.22 15 10 C 0.06 3.37 4.20 29.10 0.12 3.49 15 11 C -0.52 -28.45 8.69 25.60 0.22 -28.23 15 12 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 13 C 0.01 0.48 5.46 84.66 0.46 0.94 15 14 N -0.93 -55.04 13.29 21.45 0.28 -54.76 15 15 Si 0.96 43.01 29.54 68.60 2.03 45.04 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 19 H 0.07 2.21 8.14 -2.38 -0.02 2.19 15 20 H 0.09 2.27 8.08 -2.39 -0.02 2.25 15 21 H 0.05 2.21 6.36 -2.39 -0.02 2.20 15 22 H 0.17 3.12 8.06 -2.91 -0.02 3.10 15 23 H 0.17 3.36 8.06 -2.91 -0.02 3.34 15 24 H 0.40 14.39 9.06 -74.06 -0.67 13.72 15 25 H 0.02 0.97 6.70 -2.38 -0.02 0.95 15 26 H 0.00 -0.06 7.52 -2.39 -0.02 -0.08 15 27 H 0.26 14.77 8.31 -92.70 -0.77 14.00 15 Total: -1.00 -65.49 243.91 4.45 -61.04 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.52 Total: 11.12 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 2.00 Total: -35.41 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.16 Total: -22.67 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.77 Total: -4.36 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -65.49 4.45 -61.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260200890.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.138 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds