Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48506 * 109.47061 * 239.99958 * 3 2 1 5 5 H 1.48494 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46988 * 120.00528 * 3 2 1 7 7 C 1.37873 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 299.99916 * 9 7 2 11 11 C 1.53000 * 109.46912 * 60.00145 * 9 7 2 12 12 N 1.46901 * 109.46818 * 185.00369 * 11 9 7 13 13 C 1.50699 * 109.47227 * 180.02562 * 9 7 2 14 14 N 1.31874 * 119.63316 * 299.72810 * 13 9 7 15 15 C 1.31849 * 121.74840 * 179.75573 * 14 13 9 16 16 C 1.38240 * 120.81623 * 0.51709 * 15 14 13 17 17 C 1.38587 * 119.19355 * 359.75068 * 16 15 14 18 18 C 1.38418 * 119.63698 * 119.99983 * 13 9 7 19 19 F 1.35100 * 120.44634 * 0.02562 * 18 13 9 20 20 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47069 * 304.99691 * 11 9 7 22 22 H 1.08991 * 109.47625 * 65.00010 * 11 9 7 23 23 H 1.00900 * 111.00172 * 180.02562 * 12 11 9 24 24 H 1.00901 * 111.00083 * 303.94749 * 12 11 9 25 25 H 1.07999 * 119.59322 * 180.26597 * 15 14 13 26 26 H 1.08008 * 120.40329 * 179.72453 * 16 15 14 27 27 H 1.07998 * 120.80280 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5799 -1.2495 12 7 -0.4522 -3.7951 -1.1905 13 6 2.2304 -3.6445 -0.0005 14 7 3.0862 -3.7707 -0.9959 15 6 3.9639 -4.7538 -1.0358 16 6 4.0114 -5.7020 -0.0310 17 6 3.1251 -5.6074 1.0302 18 6 2.2180 -4.5557 1.0414 19 9 1.3348 -4.4243 2.0552 20 1 -0.4851 0.8400 0.0004 21 1 -0.2765 -1.7043 -1.2949 22 1 1.0023 -2.6114 -2.1374 23 1 -1.0427 -3.8718 -2.0052 24 1 0.1232 -4.6169 -1.0830 25 1 4.6516 -4.8214 -1.8658 26 1 4.7303 -6.5070 -0.0727 27 1 3.1396 -6.3336 1.8293 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206738.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = -15.176586 kcal Electronic energy + Delta-G solvation = -13780.743940 eV Core-core repulsion = 11259.790987 eV Total energy + Delta-G solvation = -2520.952953 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.28307 -39.53191 -35.23349 -32.18443 -31.85990 -30.63525 -27.78864 -24.08531 -23.26161 -22.56660 -19.84115 -17.10433 -16.82304 -16.32023 -15.61878 -15.11966 -14.75911 -14.33305 -13.62402 -13.42842 -13.09308 -12.81350 -12.57222 -12.01689 -11.75774 -11.03929 -10.79933 -10.49407 -10.40481 -9.94523 -9.46961 -9.19155 -8.76735 -8.45581 -8.12146 -7.60809 -6.01598 -4.08535 1.49340 1.60523 3.33541 3.37411 3.40835 4.19799 4.44531 4.60968 5.00996 5.05373 5.27087 5.29874 5.39575 5.73129 5.96845 6.22200 6.30331 6.39722 6.84367 6.89822 7.21839 7.53284 7.76646 7.89498 8.17200 8.33719 8.35760 8.60728 8.92602 9.54485 11.03844 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.033151 B = 0.011248 C = 0.010338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.427643 B = 2488.727727 C = 2707.774396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.090 3.910 10 H 0.057 0.943 11 C 0.071 3.929 12 N -0.852 5.852 13 C 0.151 3.849 14 N -0.448 5.448 15 C 0.080 3.920 16 C -0.177 4.177 17 C -0.118 4.118 18 C 0.040 3.960 19 F -0.128 7.128 20 H 0.263 0.737 21 H 0.110 0.890 22 H 0.011 0.989 23 H 0.323 0.677 24 H 0.315 0.685 25 H 0.152 0.848 26 H 0.132 0.868 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -9.431 -0.943 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.071 3.929 10 H 0.075 0.925 11 C -0.059 4.059 12 N -0.379 5.379 13 C 0.012 3.988 14 N -0.156 5.156 15 C -0.077 4.077 16 C -0.197 4.197 17 C -0.145 4.145 18 C 0.018 3.982 19 F -0.106 7.106 20 H 0.073 0.927 21 H 0.128 0.872 22 H 0.029 0.971 23 H 0.133 0.867 24 H 0.125 0.875 25 H 0.169 0.831 26 H 0.150 0.850 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.534 -8.340 -0.920 9.537 hybrid contribution 1.017 -0.132 0.025 1.026 sum 5.551 -8.473 -0.896 10.168 Atomic orbital electron populations 1.69869 1.05755 1.26825 1.49941 1.24958 0.94949 0.99123 0.94910 0.86557 0.79517 0.82685 0.78680 1.20162 1.21173 1.20274 1.20858 0.92883 0.89048 1.51302 0.92321 1.17982 0.89858 0.88439 0.96649 0.92460 1.22051 0.95373 0.92164 0.96314 1.59028 1.27200 1.05516 1.46164 1.22527 0.94452 0.94625 0.87154 1.67750 1.03054 1.20106 1.24724 1.22852 0.96523 0.90573 0.97802 1.21839 1.00746 1.01612 0.95517 1.21528 0.95412 0.97709 0.99821 1.18758 0.92245 0.98216 0.88950 1.91490 1.66321 1.95536 1.57283 0.92675 0.87197 0.97082 0.86701 0.87521 0.83105 0.84994 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 11.29 55.43 0.63 -24.69 15 2 C 0.06 1.74 5.29 -17.82 -0.09 1.64 15 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.50 -14.05 8.43 -34.44 -0.29 -14.34 15 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 15 9 C 0.09 2.33 2.21 -92.92 -0.21 2.13 15 10 H 0.06 1.64 7.11 -51.93 -0.37 1.27 15 11 C 0.07 1.74 6.04 -3.82 -0.02 1.72 15 12 N -0.85 -17.92 9.62 -10.37 -0.10 -18.02 15 13 C 0.15 3.39 4.44 -82.51 -0.37 3.03 15 14 N -0.45 -9.38 9.79 -9.42 -0.09 -9.47 15 15 C 0.08 1.29 11.18 -17.54 -0.20 1.10 15 16 C -0.18 -2.48 10.11 -39.45 -0.40 -2.87 15 17 C -0.12 -1.85 10.16 -39.21 -0.40 -2.25 15 18 C 0.04 0.80 7.28 -39.28 -0.29 0.52 15 19 F -0.13 -2.70 16.20 2.25 0.04 -2.66 15 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 21 H 0.11 3.00 5.95 -51.93 -0.31 2.69 15 22 H 0.01 0.27 7.90 -51.93 -0.41 -0.14 15 23 H 0.32 5.91 9.08 -39.29 -0.36 5.55 15 24 H 0.31 6.29 8.07 -39.29 -0.32 5.97 15 25 H 0.15 1.91 8.06 -52.49 -0.42 1.49 15 26 H 0.13 1.33 8.06 -52.48 -0.42 0.90 15 27 H 0.14 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 241.25 15.07 3.64 3.64 Total: -1.00 -29.91 241.25 -5.75 -35.65 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.57 Total: 8.40 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.26 Total: -9.34 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.43 Total: -52.18 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.91 -5.75 -35.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206738.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.476 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds