Wall clock time and date at job start Mon Mar 30 2020 02:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.38258 * 119.93968 * 120.00106 * 12 2 1 14 14 C 1.38183 * 120.09667 * 179.97438 * 13 12 2 15 15 C 1.38662 * 119.96701 * 359.97438 * 14 13 12 16 16 O 1.35952 * 120.06227 * 180.02562 * 15 14 13 17 17 C 1.38910 * 119.87333 * 0.02562 * 15 14 13 18 18 F 1.35104 * 120.04198 * 180.02562 * 17 15 14 19 19 C 1.38258 * 119.93153 * 299.72190 * 12 2 1 20 20 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 21 21 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.07999 * 119.95217 * 359.94958 * 13 12 2 25 25 H 1.07992 * 120.01709 * 180.02562 * 14 13 12 26 26 H 0.96702 * 114.00544 * 89.99993 * 16 15 14 27 27 H 1.08000 * 119.98937 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2306 13 6 2.8271 -0.0372 -2.1398 14 6 3.2899 -0.6855 -3.2689 15 6 2.9573 -2.0133 -3.4905 16 8 3.4120 -2.6532 -4.6004 17 6 2.1587 -2.6884 -2.5761 18 9 1.8330 -3.9823 -2.7883 19 6 1.7021 -2.0357 -1.4451 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7082 1.1608 3.4845 24 1 3.0863 0.9970 -1.9675 25 1 3.9109 -0.1586 -3.9780 26 1 4.2648 -3.0928 -4.4795 27 1 1.0845 -2.5606 -0.7314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260492003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:22 Heat of formation + Delta-G solvation = -95.452779 kcal Electronic energy + Delta-G solvation = -13431.736398 eV Core-core repulsion = 10875.009657 eV Total energy + Delta-G solvation = -2556.726741 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.87486 -40.52626 -38.22618 -35.75843 -32.97837 -31.50070 -29.25518 -27.21158 -24.51001 -23.56476 -21.67320 -19.51781 -18.43919 -17.94110 -17.27990 -16.94069 -16.60156 -16.02255 -15.05311 -14.85377 -14.77082 -14.42610 -13.70059 -13.44528 -13.15234 -13.05216 -12.82433 -12.50597 -12.18254 -12.03654 -11.62622 -11.30465 -11.02302 -10.47802 -9.79854 -9.32083 -8.10768 -6.24616 0.19042 0.29574 1.41943 1.43996 1.53177 2.41501 2.64604 3.07560 3.17723 3.40131 3.89840 4.10053 4.39773 4.44911 4.80555 4.89223 5.04060 5.12862 5.15538 5.23781 5.33454 5.49770 5.64084 5.86966 5.99146 6.05278 6.32837 6.77801 6.83261 7.43495 8.93533 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.042538 B = 0.008676 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.073755 B = 3226.351834 C = 3437.444606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.070 3.930 3 H 0.020 0.980 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.272 1.272 12 C -0.034 4.034 13 C -0.123 4.123 14 C -0.104 4.104 15 C 0.053 3.947 16 O -0.496 6.496 17 C 0.054 3.946 18 F -0.146 7.146 19 C -0.142 4.142 20 H 0.029 0.971 21 H 0.028 0.972 22 H 0.062 0.938 23 H 0.263 0.737 24 H 0.143 0.857 25 H 0.167 0.833 26 H 0.407 0.593 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -3.447 -9.288 11.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.038 0.962 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.196 1.196 12 C -0.035 4.035 13 C -0.141 4.141 14 C -0.122 4.122 15 C 0.007 3.993 16 O -0.308 6.308 17 C 0.034 3.966 18 F -0.125 7.125 19 C -0.161 4.161 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.160 0.840 25 H 0.185 0.815 26 H 0.266 0.734 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.324 -3.191 -9.418 10.843 hybrid contribution 0.396 -0.826 1.300 1.591 sum 4.720 -4.016 -8.118 10.213 Atomic orbital electron populations 1.21667 0.97327 0.99227 1.00100 1.17803 0.93215 0.94586 0.89231 0.96162 1.21375 1.31235 1.12582 0.91121 0.93050 1.25661 0.95191 0.95639 1.01638 1.69991 1.37294 1.23907 1.24114 0.85646 0.78197 0.79065 0.79315 1.20034 1.20867 1.19646 1.20370 0.94217 0.92997 0.95884 1.21297 0.97955 1.01226 0.93656 1.21478 1.00267 0.92881 0.97602 1.18336 1.00413 0.92431 0.88108 1.84803 1.43126 1.71518 1.31362 1.18291 1.02697 0.79045 0.96551 1.91421 1.91426 1.34707 1.94951 1.20922 1.02973 0.95782 0.96434 0.95241 0.95270 0.91912 0.92819 0.83952 0.81505 0.73425 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.78 71.98 0.63 -5.32 15 2 C 0.07 3.39 2.48 -12.29 -0.03 3.36 15 3 H 0.02 1.04 7.87 -2.39 -0.02 1.02 15 4 C -0.53 -27.97 8.23 25.60 0.21 -27.76 15 5 H 0.05 2.74 7.60 -2.91 -0.02 2.72 15 6 C 0.02 0.96 5.30 84.66 0.45 1.41 15 7 N -0.91 -51.01 11.32 21.45 0.24 -50.77 15 8 Si 0.95 42.65 29.54 68.60 2.03 44.67 15 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 12 C -0.03 -1.41 4.74 -19.85 -0.09 -1.51 15 13 C -0.12 -4.15 9.66 22.26 0.22 -3.93 15 14 C -0.10 -2.93 9.99 22.36 0.22 -2.71 15 15 C 0.05 1.61 6.71 22.53 0.15 1.77 15 16 O -0.50 -12.69 13.37 -93.01 -1.24 -13.93 15 17 C 0.05 1.93 7.31 22.45 0.16 2.10 15 18 F -0.15 -5.26 17.11 44.97 0.77 -4.49 15 19 C -0.14 -5.69 8.67 22.30 0.19 -5.50 15 20 H 0.03 1.23 8.14 -2.38 -0.02 1.21 15 21 H 0.03 1.33 7.40 -2.39 -0.02 1.31 15 22 H 0.06 3.28 6.07 -2.39 -0.01 3.27 15 23 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 24 H 0.14 4.33 7.94 -2.91 -0.02 4.30 15 25 H 0.17 3.43 8.06 -2.91 -0.02 3.41 15 26 H 0.41 6.23 9.06 -74.06 -0.67 5.56 15 27 H 0.12 5.19 7.58 -2.91 -0.02 5.16 15 Total: -1.00 -60.21 242.57 4.43 -55.78 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.52 Total: 6.83 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 2.11 Total: -38.09 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.24 Total: -50.77 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.24 Total: -13.93 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.77 Total: -4.49 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.21 4.43 -55.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.675 kcal (2) G-P(sol) polarization free energy of solvation -60.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds