Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35334 * 116.99992 * 2 1 4 4 N 1.32475 * 120.59386 * 0.26660 * 3 2 1 5 5 C 1.32706 * 121.12752 * 180.27670 * 4 3 2 6 6 N 1.37991 * 118.80645 * 179.71017 * 5 4 3 7 7 N 1.32637 * 122.37997 * 359.44077 * 5 4 3 8 8 C 1.32659 * 121.04520 * 0.26990 * 7 5 4 9 9 N 1.37926 * 120.62567 * 179.97438 * 8 7 5 10 10 C 1.41684 * 120.60021 * 179.97438 * 3 2 1 11 11 C 1.40858 * 121.05030 * 359.97438 * 10 3 2 12 12 H 1.08001 * 119.99907 * 140.57834 * 11 10 3 13 13 C 1.39821 * 119.99794 * 320.58624 * 11 10 3 14 14 N 1.31011 * 120.00738 * 340.20573 * 13 11 10 15 15 Si 1.86807 * 119.99830 * 160.20884 * 13 11 10 16 16 H 1.48496 * 109.47051 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47208 * 119.99936 * 15 13 11 18 18 H 1.48502 * 109.46906 * 239.99839 * 15 13 11 19 19 H 1.09006 * 109.47003 * 60.00368 * 1 2 3 20 20 H 1.08997 * 109.47393 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47910 * 300.00226 * 1 2 3 22 22 H 0.97005 * 119.99719 * 179.73099 * 6 5 4 23 23 H 0.96995 * 120.00379 * 359.46669 * 6 5 4 24 24 H 0.96997 * 120.00160 * 352.82456 * 9 8 7 25 25 H 0.97007 * 119.99583 * 172.83359 * 9 8 7 26 26 H 0.96996 * 120.00879 * 175.60125 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0433 1.2058 0.0000 4 7 1.3334 2.3243 0.0053 5 6 1.9248 3.5123 -0.0001 6 7 1.1387 4.6464 -0.0003 7 7 3.2441 3.6490 -0.0001 8 6 4.0417 2.5889 0.0001 9 7 5.4126 2.7411 -0.0004 10 6 3.4574 1.2948 0.0005 11 6 4.2583 0.1361 0.0016 12 1 5.1599 0.1023 -0.5919 13 6 3.8858 -0.9704 0.7710 14 7 3.0468 -0.8238 1.7665 15 14 4.5846 -2.6581 0.3796 16 1 5.5022 -2.5562 -0.7835 17 1 5.3314 -3.1698 1.5566 18 1 3.4750 -3.5898 0.0540 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3635 0.5138 0.8899 22 1 1.5528 5.5235 -0.0003 23 1 0.1720 4.5665 -0.0043 24 1 5.8026 3.6229 -0.1059 25 1 5.9866 1.9662 0.1045 26 1 2.7390 -1.6001 2.2599 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529769.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = -8.176572 kcal Electronic energy + Delta-G solvation = -14029.690863 eV Core-core repulsion = 11528.961415 eV Total energy + Delta-G solvation = -2500.729448 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.16239 -38.79448 -36.70607 -34.97647 -33.94331 -32.10445 -30.77048 -28.00688 -26.30682 -23.62389 -23.12106 -19.51847 -19.13260 -18.82325 -17.26613 -16.81983 -16.50021 -16.31293 -15.71133 -15.45128 -15.03741 -14.97112 -14.25896 -13.48258 -12.97002 -12.76757 -12.52787 -12.41937 -12.17690 -12.00001 -11.18802 -10.73585 -10.10612 -9.72938 -9.40326 -8.61552 -8.21159 -5.89439 1.04915 1.12211 1.49173 1.54971 1.61277 2.40873 2.49810 2.94299 3.07361 3.27231 3.79840 4.29796 4.56951 4.58003 4.73109 4.79927 5.24699 5.33013 5.60973 6.20771 6.42459 6.64853 6.72125 6.78864 6.95801 7.17803 7.31348 7.51450 8.14954 8.71256 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.034144 B = 0.013986 C = 0.010448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.851204 B = 2001.553707 C = 2679.419164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.285 6.285 3 C 0.316 3.684 4 N -0.652 5.652 5 C 0.529 3.471 6 N -0.821 5.821 7 N -0.637 5.637 8 C 0.392 3.608 9 N -0.822 5.822 10 C -0.112 4.112 11 C -0.488 4.488 12 H 0.074 0.926 13 C 0.048 3.952 14 N -0.832 5.832 15 Si 0.962 3.038 16 H -0.260 1.260 17 H -0.276 1.276 18 H -0.279 1.279 19 H 0.047 0.953 20 H 0.102 0.898 21 H 0.037 0.963 22 H 0.413 0.587 23 H 0.411 0.589 24 H 0.403 0.597 25 H 0.413 0.587 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 3.080 -2.522 4.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.189 6.189 3 C 0.133 3.867 4 N -0.394 5.394 5 C 0.169 3.831 6 N -0.376 5.376 7 N -0.375 5.375 8 C 0.147 3.853 9 N -0.370 5.370 10 C -0.124 4.124 11 C -0.522 4.522 12 H 0.092 0.908 13 C -0.164 4.164 14 N -0.462 5.462 15 Si 0.786 3.214 16 H -0.184 1.184 17 H -0.202 1.202 18 H -0.204 1.204 19 H 0.066 0.934 20 H 0.120 0.880 21 H 0.056 0.944 22 H 0.244 0.756 23 H 0.242 0.758 24 H 0.232 0.768 25 H 0.245 0.755 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.604 3.351 -2.299 4.369 hybrid contribution 0.394 -1.044 0.094 1.120 sum -1.209 2.307 -2.205 3.412 Atomic orbital electron populations 1.22698 0.79426 1.02450 1.00569 1.86311 1.20946 1.24476 1.87213 1.20006 0.89087 0.82904 0.94746 1.66908 1.41824 0.98078 1.32605 1.18456 0.84741 0.85913 0.93943 1.41047 1.07726 1.03469 1.85312 1.66856 1.04133 1.33651 1.32845 1.18406 0.86653 0.87472 0.92770 1.41405 1.01039 1.12460 1.82073 1.17701 0.90407 0.93773 1.10477 1.18691 1.09722 0.98228 1.25534 0.90802 1.26187 0.94849 1.03096 0.92274 1.69885 1.28897 1.32335 1.15045 0.85467 0.78503 0.78685 0.78742 1.18358 1.20205 1.20419 0.93422 0.87977 0.94425 0.75574 0.75786 0.76758 0.75487 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.82 10.41 113.37 1.18 3.00 15 2 O -0.29 -14.87 7.60 -86.23 -0.66 -15.52 15 3 C 0.32 17.14 7.02 85.45 0.60 17.74 15 4 N -0.65 -32.45 9.36 -309.61 -2.90 -35.35 15 5 C 0.53 24.22 8.64 261.54 2.26 26.48 15 6 N -0.82 -27.51 9.05 -59.82 -0.54 -28.05 15 7 N -0.64 -29.86 10.45 -194.33 -2.03 -31.89 15 8 C 0.39 19.07 7.85 134.07 1.05 20.12 15 9 N -0.82 -31.76 8.96 -54.10 -0.48 -32.25 15 10 C -0.11 -6.07 5.39 -20.86 -0.11 -6.18 15 11 C -0.49 -26.08 8.04 23.29 0.19 -25.89 15 12 H 0.07 3.72 7.45 -2.91 -0.02 3.70 15 13 C 0.05 2.52 4.48 85.20 0.38 2.91 15 14 N -0.83 -45.87 11.33 21.82 0.25 -45.63 15 15 Si 0.96 40.40 29.61 68.60 2.03 42.44 15 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 17 H -0.28 -11.22 7.11 99.48 0.71 -10.51 15 18 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 19 H 0.05 1.82 8.12 -2.38 -0.02 1.80 15 20 H 0.10 3.48 8.14 -2.39 -0.02 3.46 15 21 H 0.04 1.54 8.12 -2.39 -0.02 1.52 15 22 H 0.41 11.60 8.94 -92.70 -0.83 10.77 15 23 H 0.41 11.89 8.93 -92.71 -0.83 11.06 15 24 H 0.40 12.92 8.95 -92.71 -0.83 12.10 15 25 H 0.41 15.23 7.54 -92.70 -0.70 14.54 15 26 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 Total: -1.00 -66.40 234.01 -0.70 -67.10 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -1.92 Total: 40.97 kcal Atomic # 6 Polarization: 32.63 SS G_CDS: 5.55 Total: 38.18 kcal Atomic # 7 Polarization: -167.46 SS G_CDS: -5.71 Total: -173.16 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.66 Total: -15.52 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.44 kcal Total: -66.40 -0.70 -67.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529769.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.924 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds