Wall clock time and date at job start Mon Mar 30 2020 02:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34877 * 117.00043 * 2 1 4 4 O 1.21599 * 120.00050 * 0.02562 * 3 2 1 5 5 C 1.46587 * 119.99920 * 180.02562 * 3 2 1 6 6 C 1.36759 * 126.85525 * 179.97438 * 5 3 2 7 7 N 1.33271 * 107.77526 * 179.97438 * 6 5 3 8 8 C 1.30884 * 109.70576 * 359.97438 * 7 6 5 9 9 N 1.34473 * 109.18064 * 0.02562 * 8 7 6 10 10 C 1.46503 * 126.47349 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46854 * 265.02193 * 10 9 8 12 12 H 1.08002 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00115 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99725 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47739 * 0.02562 * 15 13 11 17 17 H 1.48513 * 109.47129 * 119.99985 * 15 13 11 18 18 H 1.48497 * 109.47211 * 239.99722 * 15 13 11 19 19 H 1.09004 * 109.47185 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.46821 * 299.99620 * 1 2 3 21 21 H 1.08996 * 109.47697 * 59.99828 * 1 2 3 22 22 H 1.07996 * 126.11116 * 359.93135 * 6 5 3 23 23 H 1.07995 * 125.41075 * 179.73700 * 8 7 6 24 24 H 1.09001 * 109.47174 * 25.02135 * 10 9 8 25 25 H 1.08997 * 109.46865 * 145.02453 * 10 9 8 26 26 H 0.96994 * 119.99975 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2216 0.0005 5 6 3.5281 1.2784 -0.0006 6 6 4.2901 2.4141 -0.0011 7 7 5.5706 2.0450 -0.0010 8 6 5.6534 0.7388 0.0002 9 7 4.4137 0.2175 0.0003 10 6 4.0676 -1.2060 0.0009 11 6 3.8293 -1.6656 -1.4144 12 1 3.9264 -0.9673 -2.2325 13 6 3.4872 -2.9776 -1.6648 14 7 3.3684 -3.8278 -0.6685 15 14 3.1912 -3.5470 -3.4190 16 1 3.3863 -2.4063 -4.3495 17 1 4.1499 -4.6299 -3.7565 18 1 1.8027 -4.0581 -3.5459 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 3.9201 3.4288 -0.0023 23 1 6.5713 0.1699 -0.0034 24 1 4.8865 -1.7789 0.4360 25 1 3.1634 -1.3597 0.5900 26 1 3.1282 -4.7509 -0.8447 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586998.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:35 Heat of formation + Delta-G solvation = -46.936706 kcal Electronic energy + Delta-G solvation = -13800.172343 eV Core-core repulsion = 11265.469379 eV Total energy + Delta-G solvation = -2534.702964 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.09309 -40.99681 -37.46857 -35.93663 -34.00604 -31.28346 -29.24723 -28.51261 -25.37630 -24.38182 -22.26906 -21.20589 -18.99502 -18.57416 -18.10255 -17.37999 -16.94879 -16.39332 -15.92381 -15.02349 -14.79255 -14.45053 -14.29752 -14.06614 -13.58884 -13.03688 -12.96243 -12.67600 -12.30657 -11.94195 -11.88612 -11.75644 -11.15017 -10.68292 -10.52318 -9.65594 -8.32147 -6.44803 0.16008 1.37584 1.40853 1.50811 1.68635 1.78616 2.07422 2.17684 2.37455 3.02407 3.63378 3.83672 4.25018 4.29203 4.33440 4.34912 4.63374 4.66932 5.01051 5.24753 5.41345 5.52023 5.59742 5.82738 6.19554 6.62402 6.66815 6.94233 7.25016 8.76775 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.027420 B = 0.012692 C = 0.009858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.917718 B = 2205.624120 C = 2839.679438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.548 3.452 4 O -0.531 6.531 5 C -0.112 4.112 6 C 0.067 3.933 7 N -0.524 5.524 8 C 0.216 3.784 9 N -0.411 5.411 10 C 0.241 3.759 11 C -0.543 4.543 12 H 0.049 0.951 13 C 0.030 3.970 14 N -0.913 5.913 15 Si 0.961 3.039 16 H -0.276 1.276 17 H -0.272 1.272 18 H -0.275 1.275 19 H 0.116 0.884 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.199 0.801 23 H 0.239 0.761 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 3.976 1.035 4.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.266 6.266 3 C 0.395 3.605 4 O -0.423 6.423 5 C -0.227 4.227 6 C -0.090 4.090 7 N -0.243 5.243 8 C -0.066 4.066 9 N -0.089 5.089 10 C 0.122 3.878 11 C -0.581 4.581 12 H 0.067 0.933 13 C -0.171 4.171 14 N -0.551 5.551 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.201 1.201 19 H 0.135 0.865 20 H 0.091 0.909 21 H 0.084 0.916 22 H 0.216 0.784 23 H 0.255 0.745 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.402 4.331 1.092 4.681 hybrid contribution -1.111 -1.058 -0.787 1.724 sum -2.513 3.273 0.305 4.138 Atomic orbital electron populations 1.23504 0.74780 1.05047 1.02809 1.86868 1.25043 1.31335 1.83356 1.19739 0.87044 0.81796 0.71956 1.90788 1.66003 1.36284 1.49230 1.20335 0.88511 0.90080 1.23766 1.22876 0.87991 0.97988 1.00144 1.70242 1.20046 1.11203 1.22792 1.25697 0.89858 0.90401 1.00660 1.46221 1.06626 1.09054 1.46961 1.19692 0.98081 0.71492 0.98521 1.21271 1.49518 0.95560 0.91718 0.93296 1.25537 0.94139 0.96165 1.01273 1.69987 1.47396 1.05119 1.32643 0.85462 0.78249 0.78190 0.79505 1.20044 1.19753 1.20056 0.86540 0.90911 0.91597 0.78382 0.74462 0.92957 0.93520 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.57 113.37 1.20 2.17 15 2 O -0.35 -14.46 8.34 -57.91 -0.48 -14.94 15 3 C 0.55 22.80 7.93 70.00 0.55 23.35 15 4 O -0.53 -22.07 16.70 19.51 0.33 -21.75 15 5 C -0.11 -4.62 6.91 39.97 0.28 -4.35 15 6 C 0.07 2.48 11.66 84.13 0.98 3.46 15 7 N -0.52 -19.42 11.20 -199.53 -2.23 -21.65 15 8 C 0.22 7.84 12.52 180.33 2.26 10.09 15 9 N -0.41 -17.21 2.76 -520.59 -1.43 -18.65 15 10 C 0.24 11.32 5.26 85.63 0.45 11.77 15 11 C -0.54 -27.85 9.39 25.60 0.24 -27.61 15 12 H 0.05 2.62 7.81 -2.91 -0.02 2.59 15 13 C 0.03 1.55 5.46 84.66 0.46 2.01 15 14 N -0.91 -48.41 13.29 21.45 0.28 -48.13 15 15 Si 0.96 40.95 29.54 68.60 2.03 42.98 15 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 17 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 18 H -0.28 -11.43 7.11 99.48 0.71 -10.72 15 19 H 0.12 3.10 8.14 -2.38 -0.02 3.08 15 20 H 0.07 1.96 8.14 -2.38 -0.02 1.94 15 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.20 6.20 8.06 -2.91 -0.02 6.18 15 23 H 0.24 6.68 8.06 -2.91 -0.02 6.66 15 24 H 0.05 2.44 8.13 -2.39 -0.02 2.42 15 25 H 0.05 2.36 6.63 -2.39 -0.02 2.34 15 26 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 Total: -1.00 -59.80 244.24 6.09 -53.71 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.19 Total: 7.52 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.42 Total: 20.90 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -3.38 Total: -88.42 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.16 Total: -36.69 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -59.80 6.09 -53.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586998.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.770 kcal (2) G-P(sol) polarization free energy of solvation -59.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds