Wall clock time and date at job start Mon Mar 30 2020 02:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99468 * 2 1 4 4 H 1.48500 * 109.47155 * 239.99707 * 3 2 1 5 5 H 1.48493 * 109.47621 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47239 * 120.00167 * 3 2 1 7 7 C 1.37872 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47374 * 300.00612 * 9 7 2 11 11 N 1.46901 * 109.46877 * 60.00236 * 9 7 2 12 12 C 1.50698 * 109.47170 * 180.02562 * 9 7 2 13 13 N 1.30436 * 126.46378 * 285.00241 * 12 9 7 14 14 N 1.28491 * 109.98086 * 179.75473 * 13 12 9 15 15 C 1.31543 * 109.99569 * 359.87771 * 14 13 12 16 16 N 1.35999 * 126.45811 * 105.00557 * 12 9 7 17 17 C 1.47030 * 145.33148 * 0.73657 * 16 12 9 18 18 C 1.54718 * 102.50758 * 164.57346 * 17 16 12 19 19 O 1.35731 * 141.84241 * 180.99777 * 15 14 13 20 20 H 0.96999 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.00907 * 111.00078 * 60.00079 * 11 9 7 22 22 H 1.00894 * 110.99994 * 183.95151 * 11 9 7 23 23 H 1.09002 * 110.83739 * 282.88449 * 17 16 12 24 24 H 1.09000 * 110.83469 * 46.26612 * 17 16 12 25 25 H 1.09000 * 110.84474 * 142.91673 * 18 17 16 26 26 H 1.09002 * 110.84775 * 266.53913 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4062 -2.5767 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 7 2.9407 -4.0572 -1.0138 14 7 3.6734 -5.0517 -0.6603 15 6 3.4721 -5.3299 0.6095 16 7 2.5404 -4.4427 1.0560 17 6 2.2732 -4.7317 2.4726 18 6 2.8867 -6.1411 2.6486 19 8 3.8750 -6.1725 1.5944 20 1 -0.4851 0.8400 -0.0004 21 1 0.9639 -2.5251 -2.0390 22 1 -0.1577 -3.4133 -1.1912 23 1 2.7729 -4.0082 3.1169 24 1 1.2013 -4.7481 2.6695 25 1 3.3559 -6.2405 3.6274 26 1 2.1328 -6.9139 2.4983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602123.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:17 Heat of formation + Delta-G solvation = 76.488032 kcal Electronic energy + Delta-G solvation = -13837.954822 eV Core-core repulsion = 11340.896707 eV Total energy + Delta-G solvation = -2497.058115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.91165 -39.26534 -34.78277 -33.78782 -31.60819 -29.84536 -28.80384 -26.15458 -23.89313 -22.97267 -21.79685 -20.11704 -17.59590 -16.77245 -16.49791 -15.94471 -15.20896 -14.50968 -14.30515 -14.16039 -13.77457 -13.09085 -12.53736 -12.33543 -11.56456 -11.43024 -11.03351 -10.87076 -10.80746 -10.13882 -9.91822 -9.78296 -9.34908 -8.54458 -8.12140 -7.38645 -6.01876 -4.17375 2.22586 2.41177 3.07632 3.31425 3.35844 3.37127 3.45366 4.03054 4.40711 4.56160 4.70595 4.96990 5.22302 5.29730 5.31266 5.45162 5.88062 6.16123 6.25035 6.88282 7.10451 7.44384 7.79038 7.92634 8.43793 8.85651 8.94216 9.29169 9.51728 11.02927 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044611 B = 0.009308 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.490815 B = 3007.601131 C = 3086.116377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.087 3.913 3 Si 0.893 3.107 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.306 3.694 10 H 0.053 0.947 11 N -0.793 5.793 12 C 0.229 3.771 13 N -0.289 5.289 14 N -0.277 5.277 15 C 0.299 3.701 16 N -0.527 5.527 17 C 0.077 3.923 18 C 0.047 3.953 19 O -0.271 6.271 20 H 0.260 0.740 21 H 0.335 0.665 22 H 0.300 0.700 23 H 0.105 0.895 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -8.949 7.774 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.121 4.121 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.193 3.807 10 H 0.071 0.929 11 N -0.319 5.319 12 C -0.039 4.039 13 N -0.128 5.128 14 N -0.128 5.128 15 C -0.004 4.004 16 N -0.234 5.234 17 C -0.047 4.047 18 C -0.030 4.030 19 O -0.174 6.174 20 H 0.070 0.930 21 H 0.148 0.852 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.128 0.872 25 H 0.145 0.855 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.368 -8.336 6.712 10.790 hybrid contribution 0.474 0.044 1.308 1.392 sum 1.842 -8.293 8.020 11.682 Atomic orbital electron populations 1.70071 1.05704 1.26363 1.45877 1.24892 0.94732 0.98708 0.93743 0.86665 0.79646 0.82865 0.78792 1.19943 1.21130 1.20389 1.20655 0.92413 0.88697 1.55500 0.92558 1.17916 0.85257 0.85408 0.92138 0.92921 1.59309 1.26736 1.41203 1.04614 1.27515 1.00448 0.95697 0.80209 1.74339 1.07892 1.07519 1.23082 1.74634 1.22421 1.13289 1.02485 1.24327 0.94356 0.90344 0.91396 1.48006 1.36155 1.27820 1.11395 1.23053 1.04310 0.97215 0.80077 1.24523 0.90856 0.96011 0.91594 1.87093 1.43014 1.61046 1.26258 0.93027 0.85207 0.89019 0.87649 0.87192 0.85528 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 12.77 55.43 0.71 -22.90 15 2 C 0.09 2.36 5.39 -17.82 -0.10 2.26 15 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.53 -14.51 8.71 -34.44 -0.30 -14.81 15 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 15 9 C 0.31 7.47 3.16 -70.02 -0.22 7.25 15 10 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 11 N -0.79 -18.65 8.53 -6.65 -0.06 -18.71 15 12 C 0.23 5.20 7.08 -154.59 -1.10 4.10 15 13 N -0.29 -6.95 12.07 32.87 0.40 -6.55 15 14 N -0.28 -6.35 12.23 29.75 0.36 -5.99 15 15 C 0.30 5.94 9.54 -88.46 -0.84 5.10 15 16 N -0.53 -10.03 3.84 -113.69 -0.44 -10.46 15 17 C 0.08 0.95 8.08 -2.85 -0.02 0.93 15 18 C 0.05 0.45 8.12 38.06 0.31 0.76 15 19 O -0.27 -4.26 11.19 -18.90 -0.21 -4.48 15 20 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 21 H 0.33 7.95 8.88 -39.29 -0.35 7.60 15 22 H 0.30 6.26 9.06 -39.29 -0.36 5.90 15 23 H 0.11 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.11 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.13 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 15 LS Contribution 236.27 15.07 3.56 3.56 Total: -1.00 -32.73 236.27 -5.33 -38.06 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -2.36 Total: 5.86 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.27 Total: 5.59 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: 0.97 Total: -64.60 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.21 Total: -4.48 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.73 -5.33 -38.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602123.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.546 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds