Wall clock time and date at job start Mon Mar 30 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99468 * 2 1 4 4 H 1.48500 * 109.47155 * 239.99707 * 3 2 1 5 5 H 1.48493 * 109.47621 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47239 * 120.00167 * 3 2 1 7 7 C 1.37872 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00127 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47374 * 300.00612 * 9 7 2 11 11 N 1.46901 * 109.46877 * 60.00236 * 9 7 2 12 12 C 1.50698 * 109.47170 * 180.02562 * 9 7 2 13 13 N 1.30436 * 126.46378 * 285.00241 * 12 9 7 14 14 N 1.28491 * 109.98086 * 179.75473 * 13 12 9 15 15 C 1.31543 * 109.99569 * 359.87771 * 14 13 12 16 16 N 1.35999 * 126.45811 * 105.00557 * 12 9 7 17 17 C 1.47030 * 145.33148 * 0.73657 * 16 12 9 18 18 C 1.54718 * 102.50758 * 164.57346 * 17 16 12 19 19 O 1.35731 * 141.84241 * 180.99777 * 15 14 13 20 20 H 0.96999 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.00907 * 111.00078 * 60.00079 * 11 9 7 22 22 H 1.00894 * 110.99994 * 183.95151 * 11 9 7 23 23 H 1.09002 * 110.83739 * 282.88449 * 17 16 12 24 24 H 1.09000 * 110.83469 * 46.26612 * 17 16 12 25 25 H 1.09000 * 110.84474 * 142.91673 * 18 17 16 26 26 H 1.09002 * 110.84775 * 266.53913 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4062 -2.5767 -1.1997 12 6 2.2305 -3.6445 -0.0005 13 7 2.9407 -4.0572 -1.0138 14 7 3.6734 -5.0517 -0.6603 15 6 3.4721 -5.3299 0.6095 16 7 2.5404 -4.4427 1.0560 17 6 2.2732 -4.7317 2.4726 18 6 2.8867 -6.1411 2.6486 19 8 3.8750 -6.1725 1.5944 20 1 -0.4851 0.8400 -0.0004 21 1 0.9639 -2.5251 -2.0390 22 1 -0.1577 -3.4133 -1.1912 23 1 2.7729 -4.0082 3.1169 24 1 1.2013 -4.7481 2.6695 25 1 3.3559 -6.2405 3.6274 26 1 2.1328 -6.9139 2.4983 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602123.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:15 Heat of formation + Delta-G solvation = 48.954512 kcal Electronic energy + Delta-G solvation = -13839.148765 eV Core-core repulsion = 11340.896707 eV Total energy + Delta-G solvation = -2498.252058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -44.42551 -40.57291 -36.66228 -35.18549 -33.61126 -31.00411 -30.47171 -28.14578 -25.11438 -24.65567 -23.28541 -21.73342 -18.98998 -18.33735 -18.11563 -17.47005 -16.75568 -16.16583 -16.01189 -15.58620 -14.88398 -14.73580 -14.41483 -13.55077 -13.28221 -12.83966 -12.75425 -12.65505 -12.43037 -12.05743 -11.62467 -11.39566 -11.04576 -10.61044 -9.76779 -9.21831 -8.07895 -6.29673 0.74776 1.02044 1.43666 1.46865 1.53487 1.72334 1.86355 2.45422 3.11052 3.17697 3.44804 3.73018 3.80868 4.17485 4.30395 4.35808 4.46142 4.57506 4.68525 5.22202 5.32967 5.66673 5.92386 6.05004 6.47308 6.88771 7.06786 7.42535 7.64939 8.96172 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044611 B = 0.009308 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.490815 B = 3007.601131 C = 3086.116377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.048 3.952 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.037 0.963 9 C 0.316 3.684 10 H 0.044 0.956 11 N -0.800 5.800 12 C 0.213 3.787 13 N -0.315 5.315 14 N -0.320 5.320 15 C 0.315 3.685 16 N -0.527 5.527 17 C 0.061 3.939 18 C 0.051 3.949 19 O -0.276 6.276 20 H 0.262 0.738 21 H 0.331 0.669 22 H 0.314 0.686 23 H 0.118 0.882 24 H 0.133 0.867 25 H 0.176 0.824 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -9.530 9.575 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.157 4.157 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.202 3.798 10 H 0.061 0.939 11 N -0.326 5.326 12 C -0.057 4.057 13 N -0.155 5.155 14 N -0.172 5.172 15 C 0.010 3.990 16 N -0.233 5.233 17 C -0.060 4.060 18 C -0.024 4.024 19 O -0.180 6.180 20 H 0.071 0.929 21 H 0.144 0.856 22 H 0.125 0.875 23 H 0.136 0.864 24 H 0.151 0.849 25 H 0.193 0.807 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.437 -8.947 8.566 12.469 hybrid contribution 0.458 0.107 0.878 0.996 sum 1.895 -8.840 9.444 13.074 Atomic orbital electron populations 1.70150 1.06695 1.27164 1.46398 1.25516 0.95497 1.01419 0.93315 0.85759 0.78567 0.79490 0.78551 1.20539 1.20134 1.19710 1.20812 0.91723 0.90536 1.55915 0.94478 1.17527 0.85253 0.85174 0.91831 0.93863 1.59183 1.26899 1.42277 1.04192 1.26891 1.00919 0.96315 0.81546 1.74224 1.08506 1.08189 1.24545 1.74447 1.23795 1.14102 1.04854 1.24353 0.92977 0.90386 0.91282 1.48166 1.35395 1.26507 1.13238 1.23672 1.06484 0.99186 0.76634 1.25089 0.90664 0.94815 0.91786 1.87131 1.44825 1.59817 1.26205 0.92861 0.85622 0.87458 0.86412 0.84870 0.80665 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.32 12.77 21.44 0.27 -48.05 15 2 C 0.05 2.61 5.39 84.65 0.46 3.06 15 3 Si 0.95 43.05 29.54 68.60 2.03 45.08 15 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 7 C -0.55 -30.28 8.71 25.60 0.22 -30.05 15 8 H 0.04 2.13 7.74 -2.91 -0.02 2.11 15 9 C 0.32 15.53 3.16 43.42 0.14 15.67 15 10 H 0.04 2.19 8.14 -2.39 -0.02 2.17 15 11 N -0.80 -37.95 8.53 -174.96 -1.49 -39.45 15 12 C 0.21 9.71 7.08 137.84 0.98 10.69 15 13 N -0.32 -15.41 12.07 -49.90 -0.60 -16.01 15 14 N -0.32 -14.80 12.23 -172.99 -2.12 -16.91 15 15 C 0.32 12.15 9.54 179.59 1.71 13.86 15 16 N -0.53 -19.39 3.84 -624.38 -2.40 -21.79 15 17 C 0.06 1.32 8.08 86.86 0.70 2.02 15 18 C 0.05 0.77 8.12 72.57 0.59 1.36 15 19 O -0.28 -7.93 11.19 -90.54 -1.01 -8.94 15 20 H 0.26 13.87 8.31 -92.71 -0.77 13.10 15 21 H 0.33 16.05 8.88 -89.69 -0.80 15.26 15 22 H 0.31 13.17 9.06 -89.70 -0.81 12.35 15 23 H 0.12 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.13 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.18 1.00 8.14 -2.39 -0.02 0.98 15 26 H 0.12 1.24 8.14 -2.39 -0.02 1.22 15 Total: -1.00 -71.54 236.27 -0.90 -72.44 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.38 Total: 17.04 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 4.80 Total: 16.60 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -6.34 Total: -142.21 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.01 Total: -8.94 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.54 -0.90 -72.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602123.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.394 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds