Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 N 1.30427 * 126.46271 * 74.68792 * 12 9 7 14 14 N 1.28491 * 109.98353 * 180.11429 * 13 12 9 15 15 C 1.31546 * 109.99249 * 0.52112 * 14 13 12 16 16 N 1.36000 * 126.45583 * 254.99305 * 12 9 7 17 17 C 1.47035 * 145.33378 * 359.10275 * 16 12 9 18 18 C 1.54715 * 102.32164 * 195.49238 * 17 16 12 19 19 O 1.35731 * 141.84677 * 178.94367 * 15 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.00907 * 110.99792 * 176.04814 * 11 9 7 22 22 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 23 23 H 1.08997 * 110.83250 * 313.69602 * 17 16 12 24 24 H 1.08994 * 110.83454 * 77.07975 * 17 16 12 25 25 H 1.08995 * 110.84674 * 93.55682 * 18 17 16 26 26 H 1.09003 * 110.84373 * 217.17103 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 7 2.9444 -4.0583 0.9996 14 7 3.6737 -5.0543 0.6430 15 6 3.4721 -5.3271 -0.6280 16 7 2.5402 -4.4382 -1.0704 17 6 2.2713 -4.7224 -2.4878 18 6 2.8873 -6.1305 -2.6648 19 8 3.8730 -6.1670 -1.6159 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1577 -3.4189 1.1814 22 1 0.9642 -2.5347 2.0330 23 1 1.1991 -4.7410 -2.6828 24 1 2.7679 -3.9950 -3.1300 25 1 2.1345 -6.9046 -2.5168 26 1 3.3581 -6.2277 -3.6432 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602140.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = 76.463438 kcal Electronic energy + Delta-G solvation = -13839.461594 eV Core-core repulsion = 11342.402412 eV Total energy + Delta-G solvation = -2497.059182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.92641 -39.31291 -34.78277 -33.79723 -31.60971 -29.84132 -28.80972 -26.15404 -23.90350 -22.97454 -21.80721 -20.11993 -17.60999 -16.78052 -16.50061 -15.94655 -15.21733 -14.51361 -14.31793 -14.16093 -13.77609 -13.09433 -12.53802 -12.33940 -11.56550 -11.42125 -11.03340 -10.87052 -10.80851 -10.13724 -9.92632 -9.77859 -9.34948 -8.54519 -8.12371 -7.38823 -6.02015 -4.17446 2.22915 2.41188 3.08325 3.31380 3.35723 3.36992 3.45184 4.03148 4.40631 4.56289 4.70522 4.97355 5.22216 5.29975 5.31193 5.45890 5.88565 6.16003 6.24941 6.88220 7.10376 7.44304 7.78954 7.92508 8.43759 8.85566 8.94133 9.28994 9.51595 11.02795 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044591 B = 0.009312 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.773636 B = 3006.043848 C = 3085.050773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.087 3.913 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.056 0.944 9 C 0.306 3.694 10 H 0.053 0.947 11 N -0.793 5.793 12 C 0.229 3.771 13 N -0.289 5.289 14 N -0.276 5.276 15 C 0.299 3.701 16 N -0.528 5.528 17 C 0.077 3.923 18 C 0.046 3.954 19 O -0.269 6.269 20 H 0.260 0.740 21 H 0.300 0.700 22 H 0.335 0.665 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -8.915 -7.790 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.121 4.121 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.193 3.807 10 H 0.071 0.929 11 N -0.319 5.319 12 C -0.039 4.039 13 N -0.128 5.128 14 N -0.128 5.128 15 C -0.005 4.005 16 N -0.234 5.234 17 C -0.046 4.046 18 C -0.031 4.031 19 O -0.173 6.173 20 H 0.070 0.930 21 H 0.110 0.890 22 H 0.148 0.852 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.108 0.892 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.377 -8.305 -6.727 10.776 hybrid contribution 0.469 0.046 -1.318 1.399 sum 1.846 -8.258 -8.045 11.676 Atomic orbital electron populations 1.70078 1.05704 1.26354 1.45886 1.24898 0.94737 0.98716 0.93750 0.86662 0.79643 0.82851 0.78792 1.20396 1.21129 1.19934 1.20656 0.92410 0.88687 1.55496 0.92555 1.17918 0.85264 0.85395 0.92147 0.92912 1.59312 1.26734 1.41225 1.04597 1.27517 1.00392 0.95792 0.80166 1.74337 1.07857 1.07422 1.23197 1.74637 1.22555 1.13274 1.02342 1.24335 0.94447 0.90307 0.91371 1.48011 1.36049 1.27975 1.11356 1.23068 1.04301 0.97247 0.80017 1.24427 0.90932 0.96011 0.91681 1.87003 1.43052 1.61166 1.26045 0.93030 0.89021 0.85204 0.87196 0.87621 0.89224 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.61 12.78 55.43 0.71 -22.90 15 2 C 0.09 2.35 5.39 -17.82 -0.10 2.26 15 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.53 -14.51 8.71 -34.44 -0.30 -14.81 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.31 7.47 3.15 -70.02 -0.22 7.25 15 10 H 0.05 1.33 8.14 -51.93 -0.42 0.90 15 11 N -0.79 -18.64 8.54 -6.65 -0.06 -18.70 15 12 C 0.23 5.19 7.08 -154.60 -1.09 4.10 15 13 N -0.29 -6.94 12.07 32.87 0.40 -6.54 15 14 N -0.28 -6.34 12.23 29.75 0.36 -5.98 15 15 C 0.30 5.93 9.54 -88.45 -0.84 5.08 15 16 N -0.53 -10.03 3.84 -113.70 -0.44 -10.46 15 17 C 0.08 0.95 8.10 -2.85 -0.02 0.93 15 18 C 0.05 0.45 8.09 38.06 0.31 0.76 15 19 O -0.27 -4.24 11.17 -18.90 -0.21 -4.45 15 20 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 21 H 0.30 6.25 9.06 -39.29 -0.36 5.90 15 22 H 0.33 7.95 8.88 -39.29 -0.35 7.60 15 23 H 0.11 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.13 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 236.25 15.07 3.56 3.56 Total: -1.00 -32.70 236.25 -5.33 -38.02 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -2.36 Total: 5.86 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.27 Total: 5.57 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: 0.98 Total: -64.58 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.21 Total: -4.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -32.70 -5.33 -38.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602140.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.488 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds