Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 N 1.30427 * 126.46271 * 74.68792 * 12 9 7 14 14 N 1.28491 * 109.98353 * 180.11429 * 13 12 9 15 15 C 1.31546 * 109.99249 * 0.52112 * 14 13 12 16 16 N 1.36000 * 126.45583 * 254.99305 * 12 9 7 17 17 C 1.47035 * 145.33378 * 359.10275 * 16 12 9 18 18 C 1.54715 * 102.32164 * 195.49238 * 17 16 12 19 19 O 1.35731 * 141.84677 * 178.94367 * 15 14 13 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.00907 * 110.99792 * 176.04814 * 11 9 7 22 22 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 23 23 H 1.08997 * 110.83250 * 313.69602 * 17 16 12 24 24 H 1.08994 * 110.83454 * 77.07975 * 17 16 12 25 25 H 1.08995 * 110.84674 * 93.55682 * 18 17 16 26 26 H 1.09003 * 110.84373 * 217.17103 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 7 2.9444 -4.0583 0.9996 14 7 3.6737 -5.0543 0.6430 15 6 3.4721 -5.3271 -0.6280 16 7 2.5402 -4.4382 -1.0704 17 6 2.2713 -4.7224 -2.4878 18 6 2.8873 -6.1305 -2.6648 19 8 3.8730 -6.1670 -1.6159 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1577 -3.4189 1.1814 22 1 0.9642 -2.5347 2.0330 23 1 1.1991 -4.7410 -2.6828 24 1 2.7679 -3.9950 -3.1300 25 1 2.1345 -6.9046 -2.5168 26 1 3.3581 -6.2277 -3.6432 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602140.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = 48.967249 kcal Electronic energy + Delta-G solvation = -13840.653918 eV Core-core repulsion = 11342.402412 eV Total energy + Delta-G solvation = -2498.251506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.43804 -40.62147 -36.66179 -35.19526 -33.61278 -31.00271 -30.47581 -28.14490 -25.11975 -24.66480 -23.29429 -21.73633 -18.99875 -18.34470 -18.12197 -17.47186 -16.75699 -16.17410 -16.01330 -15.60215 -14.88462 -14.74176 -14.41625 -13.55290 -13.28713 -12.83940 -12.75441 -12.65373 -12.42416 -12.05544 -11.62913 -11.39058 -11.04735 -10.61085 -9.76892 -9.21990 -8.08005 -6.29719 0.74605 1.02191 1.43709 1.46754 1.53482 1.72527 1.86492 2.45386 3.11057 3.17633 3.44468 3.73370 3.80879 4.17483 4.30434 4.36385 4.46162 4.57871 4.68497 5.22145 5.33074 5.66621 5.92357 6.05002 6.47320 6.88779 7.06731 7.42430 7.64802 8.96070 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.044591 B = 0.009312 C = 0.009074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.773636 B = 3006.043848 C = 3085.050773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.048 3.952 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.037 0.963 9 C 0.316 3.684 10 H 0.044 0.956 11 N -0.800 5.800 12 C 0.213 3.787 13 N -0.315 5.315 14 N -0.320 5.320 15 C 0.315 3.685 16 N -0.527 5.527 17 C 0.061 3.939 18 C 0.050 3.950 19 O -0.274 6.274 20 H 0.262 0.738 21 H 0.314 0.686 22 H 0.331 0.669 23 H 0.133 0.867 24 H 0.118 0.882 25 H 0.115 0.885 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -9.489 -9.588 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.158 4.158 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.202 3.798 10 H 0.061 0.939 11 N -0.326 5.326 12 C -0.057 4.057 13 N -0.154 5.154 14 N -0.172 5.172 15 C 0.010 3.990 16 N -0.233 5.233 17 C -0.059 4.059 18 C -0.025 4.025 19 O -0.178 6.178 20 H 0.071 0.929 21 H 0.125 0.875 22 H 0.144 0.856 23 H 0.151 0.849 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.448 -8.907 -8.577 12.450 hybrid contribution 0.453 0.107 -0.888 1.003 sum 1.901 -8.799 -9.466 13.063 Atomic orbital electron populations 1.70157 1.06697 1.27156 1.46409 1.25522 0.95503 1.01429 0.93321 0.85757 0.78564 0.79475 0.78553 1.19722 1.20135 1.20520 1.20813 0.91722 0.90526 1.55909 0.94473 1.17528 0.85259 0.85164 0.91838 0.93858 1.59186 1.26897 1.42300 1.04177 1.26893 1.00855 0.96407 0.81508 1.74222 1.08473 1.08093 1.24661 1.74450 1.23934 1.14075 1.04702 1.24364 0.93064 0.90349 0.91266 1.48171 1.35295 1.26668 1.13188 1.23685 1.06471 0.99199 0.76571 1.24988 0.90765 0.94837 0.91890 1.87042 1.44834 1.59949 1.25960 0.92865 0.87457 0.85616 0.84877 0.86383 0.86682 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.33 12.78 21.45 0.27 -48.05 15 2 C 0.05 2.59 5.39 84.66 0.46 3.05 15 3 Si 0.95 43.05 29.54 68.60 2.03 45.07 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 15 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 7 C -0.55 -30.26 8.71 25.60 0.22 -30.04 15 8 H 0.04 2.14 7.74 -2.91 -0.02 2.11 15 9 C 0.32 15.53 3.15 43.42 0.14 15.66 15 10 H 0.04 2.19 8.14 -2.39 -0.02 2.17 15 11 N -0.80 -37.94 8.54 -174.96 -1.49 -39.44 15 12 C 0.21 9.71 7.08 137.84 0.98 10.68 15 13 N -0.32 -15.39 12.07 -49.91 -0.60 -16.00 15 14 N -0.32 -14.77 12.23 -172.99 -2.12 -16.89 15 15 C 0.31 12.11 9.54 179.59 1.71 13.83 15 16 N -0.53 -19.39 3.84 -624.39 -2.40 -21.79 15 17 C 0.06 1.33 8.10 86.86 0.70 2.03 15 18 C 0.05 0.75 8.09 72.57 0.59 1.34 15 19 O -0.27 -7.87 11.17 -90.54 -1.01 -8.88 15 20 H 0.26 13.87 8.31 -92.70 -0.77 13.10 15 21 H 0.31 13.16 9.06 -89.69 -0.81 12.35 15 22 H 0.33 16.05 8.88 -89.69 -0.80 15.25 15 23 H 0.13 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.12 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.18 1.01 8.14 -2.39 -0.02 1.00 15 Total: -1.00 -71.43 236.25 -0.91 -72.34 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.38 Total: 17.07 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 4.80 Total: 16.55 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -6.34 Total: -142.16 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.01 Total: -8.88 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -71.43 -0.91 -72.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602140.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.305 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds