Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47371 * 2 1 4 4 C 1.50703 * 109.46988 * 120.00142 * 2 1 3 5 5 H 1.08006 * 119.99872 * 114.69370 * 4 2 1 6 6 C 1.37881 * 119.99906 * 294.69867 * 4 2 1 7 7 N 1.31516 * 120.00116 * 352.79106 * 6 4 2 8 8 Si 1.86803 * 119.99716 * 173.06825 * 6 4 2 9 9 H 1.48501 * 109.47055 * 265.34164 * 8 6 4 10 10 H 1.48497 * 109.47476 * 25.34164 * 8 6 4 11 11 H 1.48504 * 109.46667 * 145.34410 * 8 6 4 12 12 C 1.50700 * 109.47078 * 239.99909 * 2 1 3 13 13 C 1.38174 * 120.01552 * 299.72495 * 12 2 1 14 14 C 1.38432 * 120.02788 * 179.79364 * 13 12 2 15 15 F 1.35101 * 119.96852 * 180.23481 * 14 13 12 16 16 C 1.38476 * 120.06031 * 0.46016 * 14 13 12 17 17 C 1.38124 * 120.03333 * 359.79840 * 16 14 13 18 18 C 1.38689 * 120.01380 * 120.00410 * 12 2 1 19 19 O 1.35940 * 120.02817 * 359.95449 * 18 12 2 20 20 H 1.08996 * 109.47209 * 185.38484 * 1 2 3 21 21 H 1.08999 * 109.47125 * 305.38827 * 1 2 3 22 22 H 1.09004 * 109.46705 * 65.38331 * 1 2 3 23 23 H 0.96999 * 120.00020 * 180.27475 * 7 6 4 24 24 H 1.08002 * 119.98641 * 0.02562 * 13 12 2 25 25 H 1.07999 * 119.98399 * 179.76965 * 16 14 13 26 26 H 1.08000 * 120.01899 * 179.97438 * 17 16 14 27 27 H 0.96706 * 114.00116 * 90.00525 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5807 -1.6359 1.1337 6 6 1.7917 -0.1791 2.4798 7 7 1.2506 1.0142 2.5939 8 14 2.2413 -1.1509 4.0105 9 1 1.0534 -1.9056 4.4844 10 1 3.3360 -2.1017 3.6895 11 1 2.6920 -0.2180 5.0744 12 6 2.0323 -0.7104 -1.2305 13 6 1.7034 -2.0349 -1.4465 14 6 2.1611 -2.6866 -2.5789 15 9 1.8349 -3.9802 -2.7913 16 6 2.9570 -2.0149 -3.4916 17 6 3.2917 -0.6924 -3.2755 18 6 2.8297 -0.0367 -2.1435 19 8 3.1580 1.2650 -1.9297 20 1 -0.3633 -1.0231 0.0964 21 1 -0.3633 0.5951 0.8378 22 1 -0.3633 0.4281 -0.9343 23 1 1.0850 1.3896 3.4728 24 1 1.0858 -2.5610 -0.7336 25 1 3.3165 -2.5256 -4.3728 26 1 3.9128 -0.1690 -3.9873 27 1 3.9743 1.3872 -1.4258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260633100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -78.817853 kcal Electronic energy + Delta-G solvation = -13572.960753 eV Core-core repulsion = 11016.955357 eV Total energy + Delta-G solvation = -2556.005396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.44160 -39.25535 -35.91706 -34.39144 -31.56323 -29.19040 -28.04778 -25.15695 -23.15321 -21.89615 -19.91158 -17.83069 -16.70250 -16.55751 -15.71369 -15.18253 -14.81685 -14.60163 -13.59600 -13.27667 -13.03048 -12.79800 -12.06703 -11.76220 -11.44863 -11.27435 -10.95675 -10.79296 -10.59972 -10.27488 -10.14257 -9.30762 -9.11273 -8.42598 -8.31531 -7.81709 -6.09503 -4.13871 1.59270 1.77876 3.26218 3.33866 3.36908 4.00786 4.38866 4.73089 4.79851 5.22720 5.28794 5.34650 5.74736 5.92851 6.35894 6.39613 6.57561 6.69910 6.78666 6.91133 7.06492 7.13542 7.35234 7.63532 7.85873 7.92917 8.21278 8.28837 8.89235 9.50234 10.98803 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032820 B = 0.010475 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.941680 B = 2672.274355 C = 3087.049228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.069 3.931 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 C -0.027 4.027 13 C -0.132 4.132 14 C 0.079 3.921 15 F -0.149 7.149 16 C -0.167 4.167 17 C -0.123 4.123 18 C 0.083 3.917 19 O -0.492 6.492 20 H 0.032 0.968 21 H 0.070 0.930 22 H 0.014 0.986 23 H 0.262 0.738 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -3.125 -8.007 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.074 0.926 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.212 1.212 12 C -0.028 4.028 13 C -0.151 4.151 14 C 0.060 3.940 15 F -0.128 7.128 16 C -0.186 4.186 17 C -0.142 4.142 18 C 0.038 3.962 19 O -0.302 6.302 20 H 0.051 0.949 21 H 0.088 0.912 22 H 0.033 0.967 23 H 0.072 0.928 24 H 0.156 0.844 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.557 -2.919 -8.191 9.064 hybrid contribution 0.616 -0.840 1.119 1.529 sum 3.173 -3.759 -7.072 8.615 Atomic orbital electron populations 1.21717 0.97683 0.99755 0.99156 1.17898 0.92666 0.96726 0.87649 0.92623 1.21099 1.36079 1.08234 0.89967 0.92432 1.24949 0.95071 0.94674 0.98946 1.69957 1.43607 1.14952 1.23811 0.86604 0.78770 0.79987 0.82829 1.20593 1.19843 1.21188 1.20920 0.93333 0.92562 0.95959 1.21017 1.02445 0.95301 0.96354 1.17785 1.00482 0.78781 0.96923 1.91436 1.91380 1.34994 1.94993 1.20716 1.02274 0.95226 1.00385 1.21115 1.01010 0.93691 0.98371 1.18416 0.99137 0.84341 0.94273 1.84782 1.47140 1.21147 1.77096 0.94927 0.91157 0.96740 0.92838 0.84420 0.85498 0.85442 0.75727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.70 37.16 0.32 -2.65 15 2 C 0.07 1.69 2.31 -92.92 -0.21 1.47 15 3 H 0.06 1.48 6.96 -51.93 -0.36 1.11 15 4 C -0.52 -13.64 8.19 -34.44 -0.28 -13.92 15 5 H 0.06 1.52 7.54 -52.48 -0.40 1.13 15 6 C 0.07 1.77 5.26 -17.82 -0.09 1.68 15 7 N -0.89 -24.75 12.08 55.43 0.67 -24.08 15 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 15 9 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 12 C -0.03 -0.58 4.76 -104.48 -0.50 -1.07 15 13 C -0.13 -2.65 8.68 -39.53 -0.34 -2.99 15 14 C 0.08 1.42 7.30 -39.42 -0.29 1.13 15 15 F -0.15 -2.61 17.27 2.25 0.04 -2.57 15 16 C -0.17 -2.64 10.02 -39.54 -0.40 -3.03 15 17 C -0.12 -1.97 9.99 -39.44 -0.39 -2.37 15 18 C 0.08 1.57 6.68 -39.23 -0.26 1.31 15 19 O -0.49 -8.89 12.27 -19.55 -0.24 -9.13 15 20 H 0.03 0.73 7.60 -51.93 -0.39 0.33 15 21 H 0.07 1.80 6.93 -51.93 -0.36 1.44 15 22 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 15 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 24 H 0.14 2.78 7.65 -52.49 -0.40 2.38 15 25 H 0.13 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.39 5.48 9.06 45.56 0.41 5.89 15 LS Contribution 242.66 15.07 3.66 3.66 Total: -1.00 -28.56 242.66 -5.25 -33.81 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -1.90 Total: 2.99 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.45 Total: -20.44 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.67 Total: -24.08 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.24 Total: -9.13 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.56 -5.25 -33.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.009 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds