Wall clock time and date at job start Mon Mar 30 2020 02:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47371 * 2 1 4 4 C 1.50703 * 109.46988 * 120.00142 * 2 1 3 5 5 H 1.08006 * 119.99872 * 114.69370 * 4 2 1 6 6 C 1.37881 * 119.99906 * 294.69867 * 4 2 1 7 7 N 1.31516 * 120.00116 * 352.79106 * 6 4 2 8 8 Si 1.86803 * 119.99716 * 173.06825 * 6 4 2 9 9 H 1.48501 * 109.47055 * 265.34164 * 8 6 4 10 10 H 1.48497 * 109.47476 * 25.34164 * 8 6 4 11 11 H 1.48504 * 109.46667 * 145.34410 * 8 6 4 12 12 C 1.50700 * 109.47078 * 239.99909 * 2 1 3 13 13 C 1.38174 * 120.01552 * 299.72495 * 12 2 1 14 14 C 1.38432 * 120.02788 * 179.79364 * 13 12 2 15 15 F 1.35101 * 119.96852 * 180.23481 * 14 13 12 16 16 C 1.38476 * 120.06031 * 0.46016 * 14 13 12 17 17 C 1.38124 * 120.03333 * 359.79840 * 16 14 13 18 18 C 1.38689 * 120.01380 * 120.00410 * 12 2 1 19 19 O 1.35940 * 120.02817 * 359.95449 * 18 12 2 20 20 H 1.08996 * 109.47209 * 185.38484 * 1 2 3 21 21 H 1.08999 * 109.47125 * 305.38827 * 1 2 3 22 22 H 1.09004 * 109.46705 * 65.38331 * 1 2 3 23 23 H 0.96999 * 120.00020 * 180.27475 * 7 6 4 24 24 H 1.08002 * 119.98641 * 0.02562 * 13 12 2 25 25 H 1.07999 * 119.98399 * 179.76965 * 16 14 13 26 26 H 1.08000 * 120.01899 * 179.97438 * 17 16 14 27 27 H 0.96706 * 114.00116 * 90.00525 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5807 -1.6359 1.1337 6 6 1.7917 -0.1791 2.4798 7 7 1.2506 1.0142 2.5939 8 14 2.2413 -1.1509 4.0105 9 1 1.0534 -1.9056 4.4844 10 1 3.3360 -2.1017 3.6895 11 1 2.6920 -0.2180 5.0744 12 6 2.0323 -0.7104 -1.2305 13 6 1.7034 -2.0349 -1.4465 14 6 2.1611 -2.6866 -2.5789 15 9 1.8349 -3.9802 -2.7913 16 6 2.9570 -2.0149 -3.4916 17 6 3.2917 -0.6924 -3.2755 18 6 2.8297 -0.0367 -2.1435 19 8 3.1580 1.2650 -1.9297 20 1 -0.3633 -1.0231 0.0964 21 1 -0.3633 0.5951 0.8378 22 1 -0.3633 0.4281 -0.9343 23 1 1.0850 1.3896 3.4728 24 1 1.0858 -2.5610 -0.7336 25 1 3.3165 -2.5256 -4.3728 26 1 3.9128 -0.1690 -3.9873 27 1 3.9743 1.3872 -1.4258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260633100.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:35 Heat of formation + Delta-G solvation = -96.603825 kcal Electronic energy + Delta-G solvation = -13573.732011 eV Core-core repulsion = 11016.955357 eV Total energy + Delta-G solvation = -2556.776654 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.81927 -40.70407 -37.34288 -36.20710 -33.42318 -30.70277 -29.59903 -27.20294 -24.73916 -23.34521 -21.61479 -19.22850 -18.46928 -18.10169 -17.31317 -16.60695 -16.51293 -16.18845 -14.98436 -14.86734 -14.67401 -14.42667 -13.63656 -13.60036 -13.19681 -12.84447 -12.73662 -12.49148 -12.31603 -12.19862 -11.88466 -11.07246 -10.93572 -10.48669 -9.77770 -9.26692 -8.14413 -6.24984 0.18560 0.37883 1.40255 1.42659 1.51903 2.40762 2.62372 3.16122 3.35387 3.46038 3.94112 4.00421 4.31392 4.53410 4.80351 4.85431 5.03635 5.12484 5.15689 5.21388 5.32922 5.47401 5.59271 5.87210 5.94130 5.98916 6.29857 6.84241 6.92306 7.42199 8.93343 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.032820 B = 0.010475 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.941680 B = 2672.274355 C = 3087.049228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.071 3.929 3 H 0.027 0.973 4 C -0.525 4.525 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.282 1.282 12 C -0.059 4.059 13 C -0.146 4.146 14 C 0.074 3.926 15 F -0.147 7.147 16 C -0.147 4.147 17 C -0.109 4.109 18 C 0.075 3.925 19 O -0.503 6.503 20 H 0.035 0.965 21 H 0.044 0.956 22 H 0.026 0.974 23 H 0.263 0.737 24 H 0.123 0.877 25 H 0.168 0.832 26 H 0.166 0.834 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -4.055 -9.490 11.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.053 3.947 3 H 0.045 0.955 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.208 1.208 12 C -0.060 4.060 13 C -0.165 4.165 14 C 0.055 3.945 15 F -0.126 7.126 16 C -0.165 4.165 17 C -0.127 4.127 18 C 0.031 3.969 19 O -0.315 6.315 20 H 0.054 0.946 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.141 0.859 25 H 0.185 0.815 26 H 0.184 0.816 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.749 -3.856 -9.675 11.070 hybrid contribution 0.274 -0.549 1.494 1.616 sum 4.024 -4.405 -8.181 10.126 Atomic orbital electron populations 1.21582 0.97748 0.99442 0.98648 1.17673 0.92713 0.95339 0.88985 0.95505 1.21361 1.35714 1.08017 0.91167 0.92982 1.25679 0.95184 0.95462 1.01727 1.70069 1.44761 1.16270 1.24374 0.85657 0.78559 0.78708 0.79442 1.20255 1.19343 1.20807 1.20666 0.95973 0.93348 0.95999 1.20897 1.03173 0.95027 0.97373 1.17840 1.00933 0.78954 0.96795 1.91443 1.91443 1.34807 1.94900 1.21153 0.99927 0.94965 1.00478 1.21441 1.00158 0.93661 0.97416 1.18606 0.98938 0.84529 0.94867 1.84733 1.48336 1.21034 1.77406 0.94609 0.93706 0.95446 0.92843 0.85890 0.81485 0.81603 0.74027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.70 71.98 0.63 -5.05 15 2 C 0.07 3.58 2.31 -12.29 -0.03 3.55 15 3 H 0.03 1.48 6.96 -2.39 -0.02 1.46 15 4 C -0.52 -28.29 8.19 25.60 0.21 -28.08 15 5 H 0.05 2.80 7.54 -2.91 -0.02 2.77 15 6 C 0.02 1.03 5.26 84.66 0.45 1.47 15 7 N -0.92 -52.38 12.08 21.45 0.26 -52.12 15 8 Si 0.95 43.01 29.54 68.60 2.03 45.03 15 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 12 C -0.06 -2.51 4.76 -19.77 -0.09 -2.61 15 13 C -0.15 -5.77 8.68 22.30 0.19 -5.58 15 14 C 0.07 2.48 7.30 22.37 0.16 2.64 15 15 F -0.15 -4.81 17.27 44.97 0.78 -4.04 15 16 C -0.15 -4.00 10.02 22.30 0.22 -3.78 15 17 C -0.11 -3.04 9.99 22.36 0.22 -2.82 15 18 C 0.08 2.73 6.68 22.50 0.15 2.88 15 19 O -0.50 -17.68 12.27 -92.88 -1.14 -18.82 15 20 H 0.03 1.65 7.60 -2.39 -0.02 1.63 15 21 H 0.04 2.36 6.93 -2.39 -0.02 2.35 15 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 24 H 0.12 5.08 7.65 -2.91 -0.02 5.06 15 25 H 0.17 3.28 8.06 -2.91 -0.02 3.25 15 26 H 0.17 3.41 8.06 -2.91 -0.02 3.39 15 27 H 0.40 11.07 9.06 -74.05 -0.67 10.40 15 Total: -1.00 -61.42 242.66 4.55 -56.87 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.52 Total: 10.44 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 2.11 Total: -37.37 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.26 Total: -52.12 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -1.14 Total: -18.82 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.04 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -61.42 4.55 -56.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633100.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.733 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds