Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38421 * 122.54188 * 2 1 4 4 C 1.33389 * 114.91888 * 179.97438 * 3 2 1 5 5 S 1.75887 * 109.59591 * 359.75781 * 4 3 2 6 6 C 1.33396 * 122.53677 * 179.97438 * 2 1 3 7 7 C 1.50700 * 125.20118 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.46700 * 181.71919 * 7 6 2 9 9 C 1.52996 * 109.47415 * 301.71501 * 7 6 2 10 10 C 1.50703 * 109.47169 * 61.72075 * 7 6 2 11 11 H 1.07999 * 119.99891 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00067 * 179.97438 * 10 7 6 13 13 N 1.31520 * 119.99743 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00170 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47208 * 60.00148 * 14 12 10 16 16 H 1.48509 * 109.47423 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47129 * 299.99822 * 14 12 10 18 18 H 1.08997 * 109.47100 * 264.84740 * 1 2 3 19 19 H 1.09004 * 109.46986 * 24.84563 * 1 2 3 20 20 H 1.09001 * 109.47354 * 144.84816 * 1 2 3 21 21 H 1.07999 * 122.54001 * 359.95540 * 3 2 1 22 22 H 1.08005 * 125.20364 * 179.97438 * 4 3 2 23 23 H 1.09009 * 109.46959 * 179.97438 * 8 7 6 24 24 H 1.09002 * 109.47404 * 60.00029 * 8 7 6 25 25 H 1.09003 * 109.47449 * 299.99842 * 8 7 6 26 26 H 1.08997 * 109.47210 * 307.55576 * 9 7 6 27 27 H 1.09006 * 109.46799 * 67.54953 * 9 7 6 28 28 H 1.08995 * 109.47144 * 187.54894 * 9 7 6 29 29 H 0.97003 * 119.99419 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9899 0.0005 5 16 3.9386 -0.7307 0.0081 6 6 2.2245 -1.1246 0.0005 7 6 1.6536 -2.5193 0.0017 8 6 2.7948 -3.5374 0.0452 9 6 0.7590 -2.7032 1.2292 10 6 0.8398 -2.7300 -1.2491 11 1 0.7452 -1.9335 -1.9723 12 6 0.2162 -3.9396 -1.4702 13 7 0.3319 -4.9097 -0.5897 14 14 -0.7931 -4.2006 -3.0202 15 1 0.0747 -4.0213 -4.2119 16 1 -1.3546 -5.5754 -3.0197 17 1 -1.9012 -3.2129 -3.0615 18 1 -0.3633 -0.0923 1.0235 19 1 -0.3633 0.9326 -0.4318 20 1 -0.3634 -0.8402 -0.5917 21 1 1.7966 2.1463 -0.0007 22 1 4.3079 1.7821 0.0002 23 1 2.3819 -4.5462 0.0465 24 1 3.3834 -3.3850 0.9499 25 1 3.4322 -3.4064 -0.8293 26 1 1.3103 -2.4209 2.1261 27 1 -0.1248 -2.0725 1.1324 28 1 0.4542 -3.7470 1.3035 29 1 -0.1066 -5.7608 -0.7454 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726478.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = 5.373228 kcal Electronic energy + Delta-G solvation = -12241.241857 eV Core-core repulsion = 10255.100436 eV Total energy + Delta-G solvation = -1986.141421 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.58997 -36.78043 -33.31013 -31.03081 -28.02565 -27.32571 -27.17457 -23.65983 -21.56019 -19.14315 -18.04806 -17.56940 -16.49739 -15.72874 -14.98568 -14.56008 -14.42577 -14.11221 -13.27835 -13.26773 -13.05421 -12.66843 -12.63284 -12.59230 -12.51521 -12.22498 -12.11933 -11.74174 -11.39138 -11.18136 -10.78854 -10.36439 -9.21093 -8.97982 -7.99178 -6.13175 0.40635 1.00031 1.38840 1.44994 1.46705 1.52923 2.06008 2.48395 3.23852 4.27179 4.34083 4.64757 4.80108 4.81232 4.84237 4.95376 5.02908 5.07261 5.17968 5.31052 5.41562 5.44597 5.60545 5.67774 5.83419 5.93236 6.12243 6.22090 6.43225 6.87501 7.51942 9.00193 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.038665 B = 0.012044 C = 0.011016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.998084 B = 2324.241566 C = 2541.205177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.144 4.144 3 C -0.129 4.129 4 C -0.234 4.234 5 S 0.046 5.954 6 C -0.139 4.139 7 C 0.122 3.878 8 C -0.127 4.127 9 C -0.115 4.115 10 C -0.502 4.502 11 H 0.047 0.953 12 C 0.026 3.974 13 N -0.905 5.905 14 Si 0.944 3.056 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.272 1.272 18 H 0.061 0.939 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.158 0.842 22 H 0.187 0.813 23 H 0.069 0.931 24 H 0.024 0.976 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 8.621 1.467 9.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C -0.159 4.159 4 C -0.368 4.368 5 S 0.311 5.689 6 C -0.256 4.256 7 C 0.120 3.880 8 C -0.186 4.186 9 C -0.173 4.173 10 C -0.541 4.541 11 H 0.065 0.935 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.771 3.229 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 H 0.079 0.921 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.175 0.825 22 H 0.204 0.796 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.107 7.620 1.508 8.787 hybrid contribution -1.679 0.316 -0.815 1.893 sum 2.428 7.936 0.693 8.328 Atomic orbital electron populations 1.20594 0.89876 1.02623 1.01753 1.19064 0.98153 0.91854 1.06390 1.20256 0.93093 0.99262 1.03308 1.25736 1.00020 0.98487 1.12586 1.83991 1.08085 1.01898 1.74918 1.25127 0.94511 1.00634 1.05307 1.16797 0.92093 0.84417 0.94736 1.21762 0.96881 1.02956 0.96951 1.21714 0.98547 1.02096 0.94983 1.21072 1.30227 0.98226 1.04533 0.93474 1.25489 0.97318 0.95805 0.98733 1.69939 1.44348 1.04271 1.35819 0.85832 0.79306 0.77105 0.80706 1.20530 1.21063 1.19683 0.92062 0.91165 0.91438 0.82491 0.79618 0.91246 0.95716 0.95783 0.96494 0.93895 0.92098 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 8.35 71.24 0.59 -2.69 15 2 C -0.14 -5.63 5.64 -20.92 -0.12 -5.74 15 3 C -0.13 -4.15 9.96 21.22 0.21 -3.94 15 4 C -0.23 -7.18 11.23 66.72 0.75 -6.43 15 5 S 0.05 1.70 21.84 -56.49 -1.23 0.46 15 6 C -0.14 -6.03 5.06 24.59 0.12 -5.91 15 7 C 0.12 5.92 0.48 -53.67 -0.03 5.89 15 8 C -0.13 -6.18 7.33 71.98 0.53 -5.66 15 9 C -0.11 -5.46 7.80 71.98 0.56 -4.90 15 10 C -0.50 -26.38 6.05 25.60 0.15 -26.22 15 11 H 0.05 2.53 7.29 -2.91 -0.02 2.51 15 12 C 0.03 1.36 5.15 84.65 0.44 1.80 15 13 N -0.90 -49.08 9.44 21.45 0.20 -48.88 15 14 Si 0.94 42.51 29.54 68.60 2.03 44.53 15 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 15 16 H -0.29 -12.64 7.11 99.48 0.71 -11.94 15 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 18 H 0.06 2.13 7.40 -2.39 -0.02 2.12 15 19 H 0.07 2.14 8.11 -2.39 -0.02 2.12 15 20 H 0.07 2.88 5.23 -2.39 -0.01 2.87 15 21 H 0.16 4.01 8.06 -2.91 -0.02 3.98 15 22 H 0.19 4.26 8.06 -2.91 -0.02 4.24 15 23 H 0.07 3.67 6.07 -2.38 -0.01 3.65 15 24 H 0.02 1.08 7.99 -2.39 -0.02 1.07 15 25 H 0.02 1.14 7.93 -2.39 -0.02 1.12 15 26 H 0.02 0.72 8.13 -2.39 -0.02 0.70 15 27 H 0.04 1.96 5.48 -2.38 -0.01 1.94 15 28 H 0.06 3.14 6.31 -2.39 -0.02 3.13 15 29 H 0.26 13.61 8.31 -92.71 -0.77 12.84 15 Total: -1.00 -55.78 243.55 5.34 -50.44 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.13 Total: 7.25 kcal Atomic # 6 Polarization: -57.02 SS G_CDS: 3.22 Total: -53.80 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.20 Total: -48.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.23 Total: 0.46 kcal Total: -55.78 5.34 -50.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726478.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.809 kcal (2) G-P(sol) polarization free energy of solvation -55.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds