Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47060 * 2 1 4 4 C 1.38191 * 120.01784 * 270.26458 * 3 2 1 5 5 C 1.40218 * 120.72626 * 0.02562 * 4 3 2 6 6 H 1.07994 * 120.00321 * 25.41906 * 5 4 3 7 7 C 1.40547 * 119.99785 * 205.42091 * 5 4 3 8 8 N 1.30461 * 120.00202 * 14.74218 * 7 5 4 9 9 Si 1.86805 * 119.99891 * 194.74229 * 7 5 4 10 10 H 1.48502 * 109.47025 * 59.99936 * 9 7 5 11 11 H 1.48499 * 109.46874 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47041 * 300.00241 * 9 7 5 13 13 C 1.39734 * 118.54873 * 180.24280 * 4 3 2 14 14 C 1.40496 * 118.54748 * 359.50012 * 13 4 3 15 15 O 1.35258 * 120.05043 * 180.23240 * 14 13 4 16 16 N 1.32400 * 119.89595 * 0.25270 * 14 13 4 17 17 C 1.33353 * 121.51695 * 0.02562 * 16 14 13 18 18 O 1.21905 * 119.24116 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.47411 * 299.99393 * 1 2 3 20 20 H 1.09003 * 109.47399 * 59.99847 * 1 2 3 21 21 H 1.09002 * 109.47157 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47052 * 240.00425 * 2 1 3 23 23 H 1.08998 * 109.46992 * 119.99904 * 2 1 3 24 24 H 0.96999 * 119.99889 * 179.97438 * 8 7 5 25 25 H 1.07994 * 120.72814 * 179.78125 * 13 4 3 26 26 H 0.96707 * 113.99590 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2435 2.0349 -1.1965 5 6 2.0093 1.3909 -2.4199 6 1 1.2966 0.5814 -2.4762 7 6 2.7020 1.7988 -3.5727 8 7 3.7543 2.5624 -3.4654 9 14 2.1159 1.2476 -5.2586 10 1 0.7298 1.7307 -5.4832 11 1 3.0107 1.8098 -6.3019 12 1 2.1410 -0.2355 -5.3309 13 6 2.7142 3.3501 -1.1607 14 6 2.9274 3.9531 0.0902 15 8 3.3780 5.2265 0.1603 16 7 2.6869 3.2728 1.2003 17 6 2.2431 2.0157 1.1652 18 8 2.0358 1.4280 2.2129 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8933 -0.5138 0.8900 24 1 4.2326 2.8436 -4.2611 25 1 2.9055 3.8928 -2.0746 26 1 3.4940 5.5535 1.0630 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260738110.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = -85.013199 kcal Electronic energy + Delta-G solvation = -13968.799940 eV Core-core repulsion = 11432.445854 eV Total energy + Delta-G solvation = -2536.354085 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.88185 -39.16568 -37.76876 -35.71954 -35.37541 -32.01519 -30.63805 -28.57059 -25.12480 -24.11932 -22.77911 -20.47721 -19.49989 -18.07674 -17.75563 -16.77705 -16.57247 -16.17726 -15.21307 -14.88511 -14.84437 -14.55322 -14.04329 -13.71991 -13.57792 -13.15870 -12.90777 -12.56335 -12.09795 -12.01115 -11.81116 -11.40072 -11.04681 -10.62830 -10.30311 -9.10430 -8.98145 -7.09101 0.49479 1.25262 1.43624 1.60361 1.66847 2.07364 2.22047 2.63943 2.93373 3.40128 3.96029 4.22282 4.33661 4.46348 4.74609 4.78753 4.84469 5.00828 5.12730 5.23688 5.34908 5.49151 5.86757 6.18037 6.33075 6.48413 6.68959 7.42022 7.73447 7.95018 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.029072 B = 0.013906 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.904609 B = 2013.036560 C = 2835.668932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.099 3.901 3 N -0.558 5.558 4 C 0.314 3.686 5 C -0.427 4.427 6 H 0.124 0.876 7 C 0.041 3.959 8 N -0.763 5.763 9 Si 1.007 2.993 10 H -0.253 1.253 11 H -0.265 1.265 12 H -0.246 1.246 13 C -0.380 4.380 14 C 0.404 3.596 15 O -0.463 6.463 16 N -0.726 5.726 17 C 0.650 3.350 18 O -0.636 6.636 19 H 0.031 0.969 20 H 0.061 0.939 21 H 0.102 0.898 22 H 0.106 0.894 23 H 0.072 0.928 24 H 0.308 0.692 25 H 0.140 0.860 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 -2.876 -7.750 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.024 4.024 3 N -0.279 5.279 4 C 0.206 3.794 5 C -0.458 4.458 6 H 0.142 0.858 7 C -0.185 4.185 8 N -0.384 5.384 9 Si 0.824 3.176 10 H -0.177 1.177 11 H -0.190 1.190 12 H -0.170 1.170 13 C -0.407 4.407 14 C 0.224 3.776 15 O -0.261 6.261 16 N -0.492 5.492 17 C 0.352 3.648 18 O -0.521 6.521 19 H 0.050 0.950 20 H 0.080 0.920 21 H 0.120 0.880 22 H 0.124 0.876 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.676 -2.807 -6.995 7.998 hybrid contribution 0.110 0.133 -0.288 0.335 sum -2.566 -2.674 -7.283 8.172 Atomic orbital electron populations 1.22011 0.93928 1.03839 1.01256 1.21734 0.96164 0.80730 1.03735 1.46669 1.59733 1.15175 1.06328 1.18408 0.86002 0.89835 0.85146 1.20068 1.19648 1.15817 0.90272 0.85847 1.27192 0.92623 0.92719 1.05924 1.69724 1.11567 1.21403 1.35727 0.84850 0.79646 0.80351 0.72768 1.17651 1.18953 1.16963 1.20761 1.28535 0.96119 0.95247 1.20242 0.83609 0.83430 0.90339 1.84921 1.80667 1.24169 1.36344 1.68927 1.40601 1.09991 1.29672 1.17375 0.79767 0.84421 0.83224 1.90700 1.62007 1.67165 1.32267 0.94955 0.91960 0.87966 0.87576 0.90962 0.87972 0.84244 0.73458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 10.17 71.98 0.73 -4.34 15 2 C 0.10 3.90 5.49 86.38 0.47 4.37 15 3 N -0.56 -27.51 2.65 -648.87 -1.72 -29.23 15 4 C 0.31 15.38 6.37 38.98 0.25 15.62 15 5 C -0.43 -18.07 8.07 23.31 0.19 -17.88 15 6 H 0.12 4.54 6.40 -2.91 -0.02 4.52 15 7 C 0.04 1.62 5.22 85.46 0.45 2.07 15 8 N -0.76 -32.63 10.85 21.93 0.24 -32.39 15 9 Si 1.01 28.29 29.59 68.60 2.03 30.32 15 10 H -0.25 -7.00 7.11 99.48 0.71 -6.29 15 11 H -0.27 -7.21 7.11 99.48 0.71 -6.51 15 12 H -0.25 -6.48 7.11 99.48 0.71 -5.78 15 13 C -0.38 -19.44 8.76 23.18 0.20 -19.24 15 14 C 0.40 20.52 7.91 85.16 0.67 21.19 15 15 O -0.46 -19.54 13.55 -85.42 -1.16 -20.69 15 16 N -0.73 -40.02 10.35 -438.89 -4.54 -44.56 15 17 C 0.65 36.71 8.34 179.56 1.50 38.21 15 18 O -0.64 -38.37 16.71 -5.01 -0.08 -38.46 15 19 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.06 2.02 7.77 -2.39 -0.02 2.00 15 21 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 22 H 0.11 3.67 6.66 -2.38 -0.02 3.66 15 23 H 0.07 2.95 7.38 -2.39 -0.02 2.94 15 24 H 0.31 11.56 8.29 -92.71 -0.77 10.79 15 25 H 0.14 7.17 6.15 -2.91 -0.02 7.15 15 26 H 0.41 13.56 8.98 -74.05 -0.66 12.90 15 Total: -1.00 -65.71 233.25 -0.21 -65.92 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.56 Total: 29.09 kcal Atomic # 6 Polarization: 35.54 SS G_CDS: 4.46 Total: 40.00 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -6.02 Total: -106.19 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.24 Total: -59.15 kcal Atomic # 14 Polarization: 28.29 SS G_CDS: 2.03 Total: 30.32 kcal Total: -65.71 -0.21 -65.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260738110.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.093 kcal (2) G-P(sol) polarization free energy of solvation -65.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds