Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99686 * 2 1 4 4 C 1.50697 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.37649 * 120.10510 * 359.97438 * 4 3 2 6 6 C 1.38562 * 120.27514 * 179.72891 * 5 4 3 7 7 C 1.38885 * 120.47798 * 0.24786 * 6 5 4 8 8 F 1.35102 * 119.90581 * 180.02562 * 7 6 5 9 9 C 1.37823 * 120.19480 * 0.04722 * 7 6 5 10 10 C 1.40699 * 119.72068 * 359.97438 * 9 7 6 11 11 C 1.41398 * 120.23116 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00432 * 154.27748 * 11 10 9 13 13 C 1.39944 * 120.00073 * 334.27659 * 11 10 9 14 14 N 1.30830 * 119.99422 * 343.41092 * 13 11 10 15 15 Si 1.86799 * 120.00028 * 163.40925 * 13 11 10 16 16 H 1.48490 * 109.47145 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46781 * 119.99971 * 15 13 11 18 18 H 1.48506 * 109.46791 * 239.99758 * 15 13 11 19 19 H 1.08997 * 109.47722 * 300.00175 * 1 2 3 20 20 H 1.09000 * 109.47075 * 60.00704 * 1 2 3 21 21 H 1.09008 * 109.46488 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47007 * 59.99345 * 3 2 1 23 23 H 1.08998 * 109.46863 * 299.99955 * 3 2 1 24 24 H 1.08001 * 119.86083 * 0.02562 * 5 4 3 25 25 H 1.08004 * 119.76684 * 180.27456 * 6 5 4 26 26 H 1.08001 * 120.13956 * 179.97438 * 9 7 6 27 27 H 0.97007 * 119.99410 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1867 0.0006 5 6 4.1068 -0.0549 0.0016 6 6 5.4877 -0.1684 -0.0034 7 6 6.2878 0.9669 -0.0044 8 9 7.6331 0.8429 -0.0099 9 6 5.7134 2.2197 0.0007 10 6 4.3120 2.3445 0.0063 11 6 3.7112 3.6245 0.0121 12 1 2.7175 3.7566 -0.3897 13 6 4.4043 4.7204 0.5385 14 7 5.4455 4.5280 1.3070 15 14 3.8429 6.4578 0.1438 16 1 2.6502 6.4040 -0.7391 17 1 3.4945 7.1634 1.4032 18 1 4.9375 7.1870 -0.5457 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 1.6884 1.8465 0.8900 23 1 1.6885 1.8464 -0.8900 24 1 3.4941 -0.9444 0.0015 25 1 5.9454 -1.1466 -0.0071 26 1 6.3364 3.1019 0.0003 27 1 5.9257 5.2876 1.6722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024426.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -100.572728 kcal Electronic energy + Delta-G solvation = -13437.830682 eV Core-core repulsion = 10880.881924 eV Total energy + Delta-G solvation = -2556.948759 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.57615 -39.79597 -38.14811 -35.58787 -32.37325 -31.46494 -28.17071 -27.10833 -25.87936 -23.14903 -21.74992 -19.47636 -17.93630 -17.24808 -16.74077 -16.65369 -16.51617 -16.22554 -16.07308 -15.06289 -14.58666 -14.00692 -13.87138 -13.77652 -13.31036 -12.84033 -12.73936 -12.33804 -12.22565 -12.03895 -11.72900 -11.31673 -11.10790 -10.60916 -9.50010 -9.12526 -8.69879 -6.47284 0.72803 0.92169 1.39807 1.49324 1.55677 2.17985 2.61642 3.00696 3.50241 3.78514 4.31128 4.45056 4.56136 4.57994 4.68081 4.71440 4.80793 4.88187 5.07011 5.12512 5.29312 5.65373 5.69419 5.80887 5.94307 6.21590 6.44786 6.54487 6.82072 6.85300 8.25420 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.013950 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.188721 B = 2006.667653 C = 3296.471031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.143 3.857 4 C -0.223 4.223 5 C -0.045 4.045 6 C -0.279 4.279 7 C 0.089 3.911 8 F -0.167 7.167 9 C -0.226 4.226 10 C 0.111 3.889 11 C -0.481 4.481 12 H 0.093 0.907 13 C 0.034 3.966 14 N -0.821 5.821 15 Si 0.986 3.014 16 H -0.250 1.250 17 H -0.265 1.265 18 H -0.268 1.268 19 H 0.045 0.955 20 H 0.048 0.952 21 H 0.102 0.898 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.131 0.869 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 -1.251 -1.775 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.068 3.932 4 C -0.224 4.224 5 C -0.063 4.063 6 C -0.299 4.299 7 C 0.070 3.930 8 F -0.146 7.146 9 C -0.247 4.247 10 C 0.108 3.892 11 C -0.509 4.509 12 H 0.111 0.889 13 C -0.182 4.182 14 N -0.446 5.446 15 Si 0.806 3.194 16 H -0.173 1.173 17 H -0.190 1.190 18 H -0.192 1.192 19 H 0.064 0.936 20 H 0.067 0.933 21 H 0.121 0.879 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.142 0.858 26 H 0.129 0.871 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.683 -1.308 -1.623 7.000 hybrid contribution 0.379 0.926 0.085 1.004 sum -6.304 -0.382 -1.538 6.500 Atomic orbital electron populations 1.22927 0.79668 1.03830 1.00644 1.87775 1.21312 1.28448 1.95558 1.20706 0.89738 0.83389 0.99413 1.19922 0.94415 0.93271 1.14797 1.20461 0.92794 0.97182 0.95829 1.20640 0.94200 0.96179 1.18898 1.17951 0.75604 0.95616 1.03794 1.91318 1.31603 1.97115 1.94566 1.21180 0.96446 0.94450 1.12604 1.17423 0.90473 0.93246 0.88031 1.19905 1.03177 0.92153 1.35649 0.88875 1.26905 0.93689 1.06010 0.91627 1.69895 1.16983 1.35553 1.22120 0.85099 0.79648 0.75347 0.79345 1.17308 1.18977 1.19247 0.93601 0.93333 0.87914 0.93412 0.93010 0.85110 0.85759 0.87110 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 15 2 O -0.41 -14.75 9.18 -148.98 -1.37 -16.12 15 3 C 0.14 5.76 5.12 71.24 0.36 6.13 15 4 C -0.22 -10.66 5.94 -19.40 -0.12 -10.78 15 5 C -0.04 -2.03 9.36 22.21 0.21 -1.82 15 6 C -0.28 -13.00 10.03 22.50 0.23 -12.77 15 7 C 0.09 4.58 7.29 22.33 0.16 4.75 15 8 F -0.17 -8.22 17.26 44.97 0.78 -7.44 15 9 C -0.23 -12.39 8.66 22.77 0.20 -12.20 15 10 C 0.11 5.88 5.56 -21.30 -0.12 5.77 15 11 C -0.48 -24.35 8.49 23.46 0.20 -24.15 15 12 H 0.09 4.38 7.01 -2.91 -0.02 4.36 15 13 C 0.03 1.64 5.16 85.26 0.44 2.08 15 14 N -0.82 -42.33 10.97 21.83 0.24 -42.09 15 15 Si 0.99 36.19 29.59 68.60 2.03 38.22 15 16 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 17 H -0.27 -9.34 7.11 99.48 0.71 -8.63 15 18 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 19 H 0.05 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.10 2.05 8.14 -2.38 -0.02 2.03 15 22 H 0.05 1.92 8.14 -2.38 -0.02 1.91 15 23 H 0.05 1.99 7.81 -2.39 -0.02 1.97 15 24 H 0.13 5.32 6.99 -2.91 -0.02 5.30 15 25 H 0.12 5.07 8.06 -2.91 -0.02 5.04 15 26 H 0.11 6.35 6.21 -2.91 -0.02 6.33 15 27 H 0.29 13.53 8.30 -92.70 -0.77 12.76 15 Total: -1.00 -58.00 241.89 5.66 -52.33 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 1.17 Total: 16.20 kcal Atomic # 6 Polarization: -43.92 SS G_CDS: 2.81 Total: -41.11 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.24 Total: -42.09 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.37 Total: -16.12 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.78 Total: -7.44 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Total: -58.00 5.66 -52.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024426.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.239 kcal (2) G-P(sol) polarization free energy of solvation -57.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds