Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.34526 * 124.93007 * 89.72543 * 5 4 2 7 7 C 1.36805 * 115.34600 * 179.78330 * 6 5 4 8 8 C 1.38283 * 114.20050 * 0.50083 * 7 6 5 9 9 C 1.39907 * 125.41195 * 179.77077 * 8 7 6 10 10 H 1.07998 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.40072 * 120.00320 * 179.97438 * 9 8 7 12 12 N 1.30866 * 119.99666 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00210 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47492 * 89.99521 * 13 11 9 15 15 H 1.48500 * 109.46939 * 209.99848 * 13 11 9 16 16 H 1.48506 * 109.46948 * 329.99351 * 13 11 9 17 17 S 1.75803 * 124.92626 * 270.02345 * 5 4 2 18 18 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 19 19 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 21 21 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 22 22 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 24 24 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 25 25 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 26 26 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 27 27 H 1.08005 * 122.32641 * 359.97438 * 6 5 4 28 28 H 1.08002 * 122.89991 * 180.26675 * 7 6 5 29 29 H 0.97002 * 120.00500 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.2189 -1.8498 -0.6316 7 6 5.5820 -1.7495 -0.6903 8 6 6.0398 -0.6005 -1.3086 9 6 7.3842 -0.2589 -1.4915 10 1 8.1620 -0.9182 -1.1356 11 6 7.7212 0.9380 -2.1363 12 7 6.7786 1.7366 -2.5680 13 14 9.5162 1.3937 -2.3812 14 1 9.9923 0.8503 -3.6786 15 1 9.6558 2.8721 -2.3825 16 1 10.3274 0.8209 -1.2770 17 16 4.6635 0.3630 -1.8296 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 0.8900 22 1 3.1301 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6054 -1.7198 -1.2951 26 1 1.7517 -0.1583 -2.1369 27 1 3.7208 -2.6911 -0.1727 28 1 6.2435 -2.5011 -0.2852 29 1 7.0119 2.5653 -3.0148 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038746.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -18.384578 kcal Electronic energy + Delta-G solvation = -11603.049394 eV Core-core repulsion = 9615.877757 eV Total energy + Delta-G solvation = -1987.171637 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -36.57509 -35.12642 -33.60610 -29.49766 -27.06574 -26.61579 -23.41484 -21.37538 -19.50011 -18.25218 -17.01143 -15.10413 -14.92449 -14.00396 -13.69658 -13.59505 -12.69770 -12.32692 -12.03956 -11.77988 -11.66980 -11.36095 -11.08513 -10.95195 -10.77858 -10.42390 -10.24276 -10.18681 -9.91308 -9.49763 -9.37935 -8.77659 -7.21533 -6.90577 -6.57456 -4.41271 2.66921 2.96585 3.01685 3.15313 3.71242 3.77704 4.21373 4.22911 5.13082 5.46612 5.54262 5.58622 6.03538 6.16940 6.25705 6.29802 6.41146 6.59557 6.65709 6.71394 6.89183 6.94713 7.00402 7.05362 7.37982 7.70144 7.90415 8.17056 8.27725 8.66317 8.68142 9.93054 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.057818 B = 0.008751 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.162817 B = 3198.915313 C = 3509.282626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.009 4.009 5 C -0.375 4.375 6 C -0.069 4.069 7 C -0.357 4.357 8 C 0.034 3.966 9 C -0.395 4.395 10 H 0.090 0.910 11 C 0.052 3.948 12 N -0.788 5.788 13 Si 0.932 3.068 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.260 1.260 17 S 0.133 5.867 18 H 0.049 0.951 19 H 0.048 0.952 20 H 0.046 0.954 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 1.243 1.090 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.048 4.048 5 C -0.491 4.491 6 C -0.098 4.098 7 C -0.382 4.382 8 C -0.086 4.086 9 C -0.431 4.431 10 H 0.108 0.892 11 C -0.167 4.167 12 N -0.416 5.416 13 Si 0.756 3.244 14 H -0.191 1.191 15 H -0.199 1.199 16 H -0.184 1.184 17 S 0.392 5.608 18 H 0.068 0.932 19 H 0.067 0.933 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.466 2.774 0.262 5.264 hybrid contribution 0.968 -1.249 0.677 1.719 sum -3.497 1.525 0.939 3.929 Atomic orbital electron populations 1.21870 0.96622 1.00842 1.00908 1.21150 0.93648 0.96910 0.99346 1.21889 1.03170 0.95421 0.99938 1.19632 0.91150 0.98261 0.95795 1.24274 0.97694 1.05799 1.21347 1.19187 0.93775 0.97020 0.99859 1.19701 0.94046 1.02761 1.21728 1.21838 0.96274 0.94678 0.95836 1.19135 0.91883 1.02949 1.29102 0.89156 1.26152 1.01088 0.95638 0.93866 1.68867 1.34623 1.10380 1.27765 0.85878 0.80430 0.78254 0.79863 1.19143 1.19868 1.18353 1.84387 0.94210 1.21972 1.60197 0.93156 0.93323 0.93464 0.91811 0.90852 0.93502 0.94158 0.93359 0.93328 0.89551 0.88644 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.19 37.16 0.34 -1.70 15 2 C -0.09 -1.60 2.91 -90.62 -0.26 -1.86 15 3 C -0.15 -2.60 8.91 37.16 0.33 -2.27 15 4 C -0.01 -0.18 5.18 -27.89 -0.14 -0.32 15 5 C -0.38 -8.89 5.10 -35.62 -0.18 -9.07 15 6 C -0.07 -1.70 10.00 -41.41 -0.41 -2.12 15 7 C -0.36 -9.48 10.20 -40.08 -0.41 -9.89 15 8 C 0.03 0.93 6.19 -38.94 -0.24 0.69 15 9 C -0.39 -10.47 9.29 -38.27 -0.36 -10.82 15 10 H 0.09 2.28 7.85 -52.49 -0.41 1.87 15 11 C 0.05 1.27 5.50 -17.28 -0.09 1.17 15 12 N -0.79 -19.68 10.65 55.56 0.59 -19.09 15 13 Si 0.93 18.17 29.56 -169.99 -5.03 13.15 15 14 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 15 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 16 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 17 S 0.13 3.39 18.79 -107.50 -2.02 1.37 15 18 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.07 1.51 6.16 -51.93 -0.32 1.19 15 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.09 1.95 8.06 -52.48 -0.42 1.52 15 28 H 0.10 2.43 8.06 -52.49 -0.42 2.01 15 29 H 0.29 6.61 8.30 -40.82 -0.34 6.27 15 LS Contribution 256.35 15.07 3.86 3.86 Total: -1.00 -27.08 256.35 -8.11 -35.19 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.09 Total: 1.70 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: -1.43 Total: -36.18 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.59 Total: -19.09 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.02 Total: 1.37 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.08 -8.11 -35.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038746.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.808 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds