Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.34526 * 124.93007 * 89.72543 * 5 4 2 7 7 C 1.36805 * 115.34600 * 179.78330 * 6 5 4 8 8 C 1.38283 * 114.20050 * 0.50083 * 7 6 5 9 9 C 1.39907 * 125.41195 * 179.77077 * 8 7 6 10 10 H 1.07998 * 119.99963 * 359.97438 * 9 8 7 11 11 C 1.40072 * 120.00320 * 179.97438 * 9 8 7 12 12 N 1.30866 * 119.99666 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00210 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47492 * 89.99521 * 13 11 9 15 15 H 1.48500 * 109.46939 * 209.99848 * 13 11 9 16 16 H 1.48506 * 109.46948 * 329.99351 * 13 11 9 17 17 S 1.75803 * 124.92626 * 270.02345 * 5 4 2 18 18 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 19 19 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 21 21 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 22 22 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 24 24 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 25 25 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 26 26 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 27 27 H 1.08005 * 122.32641 * 359.97438 * 6 5 4 28 28 H 1.08002 * 122.89991 * 180.26675 * 7 6 5 29 29 H 0.97002 * 120.00500 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.2189 -1.8498 -0.6316 7 6 5.5820 -1.7495 -0.6903 8 6 6.0398 -0.6005 -1.3086 9 6 7.3842 -0.2589 -1.4915 10 1 8.1620 -0.9182 -1.1356 11 6 7.7212 0.9380 -2.1363 12 7 6.7786 1.7366 -2.5680 13 14 9.5162 1.3937 -2.3812 14 1 9.9923 0.8503 -3.6786 15 1 9.6558 2.8721 -2.3825 16 1 10.3274 0.8209 -1.2770 17 16 4.6635 0.3630 -1.8296 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 0.8900 22 1 3.1301 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6054 -1.7198 -1.2951 26 1 1.7517 -0.1583 -2.1369 27 1 3.7208 -2.6911 -0.1727 28 1 6.2435 -2.5011 -0.2852 29 1 7.0119 2.5653 -3.0148 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038746.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -31.411419 kcal Electronic energy + Delta-G solvation = -11603.614280 eV Core-core repulsion = 9615.877757 eV Total energy + Delta-G solvation = -1987.736523 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 210.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.29041 -36.84939 -35.43989 -31.31618 -28.80411 -27.91907 -25.25255 -23.23886 -20.98979 -20.17113 -18.93509 -16.88452 -16.63235 -15.58883 -15.43640 -15.02752 -14.25094 -14.06356 -13.76105 -13.43928 -13.11302 -12.96198 -12.71954 -12.57289 -12.43726 -11.97832 -11.88607 -11.69144 -11.42762 -11.28020 -11.15964 -10.76280 -9.18188 -8.76064 -8.58864 -6.40211 0.83439 1.36465 1.50644 1.53500 1.74452 2.09236 2.28886 2.30242 3.14280 4.12202 4.20729 4.23899 4.74102 4.80218 4.82774 4.89753 4.96650 5.03608 5.07470 5.17418 5.24800 5.30454 5.41812 5.56412 5.61755 5.73249 5.95028 6.20108 6.32340 6.69312 6.70657 8.10228 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.057818 B = 0.008751 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.162817 B = 3198.915313 C = 3509.282626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.145 4.145 4 C -0.011 4.011 5 C -0.361 4.361 6 C -0.088 4.088 7 C -0.385 4.385 8 C -0.002 4.002 9 C -0.431 4.431 10 H 0.090 0.910 11 C 0.015 3.985 12 N -0.811 5.811 13 Si 1.008 2.992 14 H -0.258 1.258 15 H -0.260 1.260 16 H -0.257 1.257 17 S 0.118 5.882 18 H 0.058 0.942 19 H 0.059 0.941 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 1.941 0.985 5.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.050 4.050 5 C -0.477 4.477 6 C -0.117 4.117 7 C -0.410 4.410 8 C -0.122 4.122 9 C -0.466 4.466 10 H 0.108 0.892 11 C -0.202 4.202 12 N -0.439 5.439 13 Si 0.827 3.173 14 H -0.183 1.183 15 H -0.184 1.184 16 H -0.181 1.181 17 S 0.378 5.622 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.110 3.465 0.160 6.176 hybrid contribution 1.089 -1.459 0.709 1.954 sum -4.020 2.007 0.869 4.577 Atomic orbital electron populations 1.21788 0.93415 1.02065 1.02180 1.21094 0.96264 0.95977 0.97424 1.21861 1.00889 0.96224 1.01333 1.19778 0.88278 0.99673 0.97308 1.24762 0.99653 1.04241 1.19043 1.19388 0.93292 0.98227 1.00758 1.19911 0.95153 1.03008 1.22895 1.22250 0.97538 0.95527 0.96868 1.19454 0.91777 1.04527 1.30819 0.89182 1.27123 1.05974 0.94595 0.92544 1.68910 1.36807 1.10830 1.27326 0.84771 0.74105 0.78515 0.79905 1.18285 1.18376 1.18112 1.84229 0.94410 1.22822 1.60778 0.92321 0.92183 0.91801 0.92925 0.94297 0.92915 0.91993 0.91831 0.92864 0.87548 0.88900 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.19 71.98 0.66 -2.72 15 2 C -0.09 -2.91 2.91 -10.79 -0.03 -2.94 15 3 C -0.15 -4.95 8.91 71.98 0.64 -4.31 15 4 C -0.01 -0.42 5.18 29.85 0.15 -0.27 15 5 C -0.36 -17.05 5.10 24.83 0.13 -16.93 15 6 C -0.09 -4.37 10.00 21.08 0.21 -4.16 15 7 C -0.38 -21.03 10.20 21.94 0.22 -20.80 15 8 C 0.00 -0.11 6.19 22.68 0.14 0.03 15 9 C -0.43 -23.40 9.29 23.12 0.21 -23.19 15 10 H 0.09 4.70 7.85 -2.91 -0.02 4.68 15 11 C 0.01 0.72 5.50 85.28 0.47 1.18 15 12 N -0.81 -40.56 10.65 21.86 0.23 -40.33 15 13 Si 1.01 36.59 29.56 68.60 2.03 38.62 15 14 H -0.26 -9.02 7.11 99.48 0.71 -8.31 15 15 H -0.26 -8.78 7.11 99.48 0.71 -8.08 15 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 17 S 0.12 6.14 18.79 -56.49 -1.06 5.07 15 18 H 0.06 1.36 8.14 -2.39 -0.02 1.34 15 19 H 0.06 1.35 8.14 -2.39 -0.02 1.33 15 20 H 0.06 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.04 1.58 6.16 -2.39 -0.01 1.57 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.11 4.75 8.06 -2.91 -0.02 4.73 15 28 H 0.09 4.93 8.06 -2.91 -0.02 4.91 15 29 H 0.31 13.55 8.30 -92.71 -0.77 12.78 15 Total: -1.00 -58.62 256.35 5.12 -53.50 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.11 Total: 17.23 kcal Atomic # 6 Polarization: -76.91 SS G_CDS: 2.81 Total: -74.10 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.23 Total: -40.33 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.06 Total: 5.07 kcal Total: -58.62 5.12 -53.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038746.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.084 kcal (2) G-P(sol) polarization free energy of solvation -58.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds