Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.31836 * 120.39256 * 300.00233 * 4 2 1 6 6 C 1.33473 * 120.72794 * 179.97438 * 5 4 2 7 7 C 1.41462 * 119.24951 * 180.02562 * 6 5 4 8 8 H 1.08011 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.40054 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.30704 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00369 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47010 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47603 * 119.99985 * 11 9 7 14 14 H 1.48500 * 109.47505 * 240.00297 * 11 9 7 15 15 N 1.33497 * 121.50666 * 0.02562 * 6 5 4 16 16 C 1.31814 * 120.72367 * 359.97438 * 15 6 5 17 17 C 1.39387 * 120.39121 * 119.71999 * 4 2 1 18 18 F 1.35096 * 120.69359 * 0.02562 * 17 4 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 0.96991 * 120.00234 * 179.97438 * 10 9 7 27 27 H 1.07999 * 120.39017 * 179.97438 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7186 -0.2668 2.4316 6 6 2.1595 -0.8910 3.5258 7 6 1.8034 -0.3883 4.7992 8 1 1.1817 0.4914 4.8779 9 6 2.2567 -1.0313 5.9579 10 7 3.0086 -2.0962 5.8627 11 14 1.7870 -0.3670 7.6394 12 1 0.9363 0.8391 7.4752 13 1 1.0353 -1.4050 8.3895 14 1 3.0163 -0.0065 8.3904 15 7 2.9289 -1.9791 3.4461 16 6 3.2780 -2.4727 2.2747 17 6 2.8294 -1.8477 1.1119 18 9 3.1648 -2.3312 -0.1042 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.3229 -2.5413 6.6651 27 1 3.9010 -3.3529 2.2165 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261092729.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = -19.910635 kcal Electronic energy + Delta-G solvation = -13612.668412 eV Core-core repulsion = 11091.510175 eV Total energy + Delta-G solvation = -2521.158237 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.51136 -39.05086 -35.30431 -33.58837 -31.36301 -29.62639 -26.65856 -26.15496 -23.65450 -21.87721 -20.01419 -17.52935 -16.81452 -15.96479 -15.21749 -14.58469 -14.57147 -13.79360 -13.41829 -12.93715 -12.79320 -12.29310 -12.05052 -11.67206 -11.50129 -11.31322 -10.83355 -10.77762 -10.74360 -10.42473 -10.28314 -9.63336 -9.47493 -9.14869 -7.80302 -7.41440 -6.66500 -4.80799 2.37621 2.67943 3.00744 3.02015 3.06835 3.80739 4.49886 5.12766 5.32823 5.54515 5.70300 5.80355 5.84316 5.88181 6.06246 6.15320 6.34726 6.36527 6.38116 6.53359 6.72932 6.80962 6.95596 7.07273 7.64887 8.05476 8.31763 8.45158 8.92570 9.97400 10.12245 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.009963 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.550373 B = 2809.832865 C = 3311.622208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.133 4.133 4 C 0.180 3.820 5 N -0.566 5.566 6 C 0.380 3.620 7 C -0.390 4.390 8 H 0.096 0.904 9 C 0.063 3.937 10 N -0.708 5.708 11 Si 0.921 3.079 12 H -0.257 1.257 13 H -0.271 1.271 14 H -0.271 1.271 15 N -0.491 5.491 16 C 0.143 3.857 17 C -0.178 4.178 18 F -0.162 7.162 19 H 0.066 0.934 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.277 0.723 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 2.263 -3.850 4.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 C -0.191 4.191 4 C 0.025 3.975 5 N -0.286 5.286 6 C 0.145 3.855 7 C -0.425 4.425 8 H 0.114 0.886 9 C -0.164 4.164 10 N -0.329 5.329 11 Si 0.744 3.256 12 H -0.180 1.180 13 H -0.196 1.196 14 H -0.196 1.196 15 N -0.208 5.208 16 C -0.033 4.033 17 C -0.208 4.208 18 F -0.142 7.142 19 H 0.085 0.915 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.738 2.471 -2.722 4.066 hybrid contribution 0.294 -0.420 -0.344 0.617 sum -1.444 2.051 -3.066 3.961 Atomic orbital electron populations 1.21696 0.94206 1.01462 1.01702 1.19929 0.96203 0.95999 0.94109 1.21695 1.00560 0.95108 1.01703 1.21163 0.91610 0.90392 0.94292 1.68444 1.28509 1.34465 0.97151 1.19968 0.87691 0.86255 0.91617 1.19422 1.25488 1.10252 0.87288 0.88564 1.26157 0.93980 0.94400 1.01881 1.70126 1.19690 1.12374 1.30737 0.86040 0.79387 0.80045 0.80093 1.18035 1.19578 1.19581 1.69401 1.15621 1.13393 1.22367 1.23123 0.95101 0.97436 0.87638 1.18998 1.16064 1.04359 0.81349 1.91254 1.92350 1.88184 1.42408 0.91508 0.93299 0.93089 0.90570 0.93300 0.93092 0.91506 0.91127 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.10 37.16 0.34 -1.89 15 2 C -0.04 -0.81 3.18 -91.78 -0.29 -1.10 15 3 C -0.13 -2.23 9.10 37.16 0.34 -1.89 15 4 C 0.18 4.22 5.49 -82.16 -0.45 3.77 15 5 N -0.57 -14.64 9.92 -8.84 -0.09 -14.72 15 6 C 0.38 10.56 7.36 -158.30 -1.17 9.39 15 7 C -0.39 -10.39 9.37 -37.67 -0.35 -10.75 15 8 H 0.10 2.45 7.85 -52.48 -0.41 2.04 15 9 C 0.06 1.56 5.50 -17.35 -0.10 1.46 15 10 N -0.71 -18.22 11.42 55.55 0.63 -17.59 15 11 Si 0.92 17.97 29.56 -169.99 -5.02 12.94 15 12 H -0.26 -4.94 7.11 56.52 0.40 -4.53 15 13 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 15 N -0.49 -13.54 7.86 -12.59 -0.10 -13.64 15 16 C 0.14 3.53 11.31 -17.12 -0.19 3.34 15 17 C -0.18 -4.26 7.36 -38.71 -0.28 -4.54 15 18 F -0.16 -3.58 16.33 2.25 0.04 -3.55 15 19 H 0.07 1.20 8.06 -51.93 -0.42 0.78 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.08 1.37 7.22 -51.93 -0.38 0.99 15 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.07 1.20 8.06 -51.93 -0.42 0.78 15 26 H 0.28 6.37 8.29 -40.82 -0.34 6.03 15 27 H 0.14 2.98 8.06 -52.49 -0.42 2.56 15 LS Contribution 244.30 15.07 3.68 3.68 Total: -1.00 -28.74 244.30 -5.89 -34.63 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -2.87 Total: 0.46 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.16 Total: -2.22 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.45 Total: -45.95 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.74 -5.89 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092729.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.721 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds