Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.31836 * 120.39256 * 300.00233 * 4 2 1 6 6 C 1.33473 * 120.72794 * 179.97438 * 5 4 2 7 7 C 1.41462 * 119.24951 * 180.02562 * 6 5 4 8 8 H 1.08011 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.40054 * 120.00469 * 179.97438 * 7 6 5 10 10 N 1.30704 * 119.99929 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00369 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47010 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47603 * 119.99985 * 11 9 7 14 14 H 1.48500 * 109.47505 * 240.00297 * 11 9 7 15 15 N 1.33497 * 121.50666 * 0.02562 * 6 5 4 16 16 C 1.31814 * 120.72367 * 359.97438 * 15 6 5 17 17 C 1.39387 * 120.39121 * 119.71999 * 4 2 1 18 18 F 1.35096 * 120.69359 * 0.02562 * 17 4 2 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 23 23 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 0.96991 * 120.00234 * 179.97438 * 10 9 7 27 27 H 1.07999 * 120.39017 * 179.97438 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7186 -0.2668 2.4316 6 6 2.1595 -0.8910 3.5258 7 6 1.8034 -0.3883 4.7992 8 1 1.1817 0.4914 4.8779 9 6 2.2567 -1.0313 5.9579 10 7 3.0086 -2.0962 5.8627 11 14 1.7870 -0.3670 7.6394 12 1 0.9363 0.8391 7.4752 13 1 1.0353 -1.4050 8.3895 14 1 3.0163 -0.0065 8.3904 15 7 2.9289 -1.9791 3.4461 16 6 3.2780 -2.4727 2.2747 17 6 2.8294 -1.8477 1.1119 18 9 3.1648 -2.3312 -0.1042 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.3229 -2.5413 6.6651 27 1 3.9010 -3.3529 2.2165 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261092729.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = -36.777381 kcal Electronic energy + Delta-G solvation = -13613.399809 eV Core-core repulsion = 11091.510175 eV Total energy + Delta-G solvation = -2521.889634 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.35089 -40.95481 -36.93672 -35.44425 -33.24849 -31.49201 -28.10033 -27.99584 -25.43935 -23.80479 -21.66660 -19.37037 -18.70166 -17.83598 -17.07081 -16.43575 -16.19896 -15.39167 -14.94023 -14.66319 -14.57616 -13.90308 -13.78188 -13.27306 -13.02236 -12.85659 -12.76802 -12.29273 -12.16378 -11.93760 -11.92400 -11.46513 -11.26283 -11.07598 -9.72147 -9.35615 -8.53368 -6.80732 0.46168 0.78338 1.40833 1.48409 1.58697 2.17989 2.63140 3.48250 3.62535 3.68883 3.92263 4.07598 4.29441 4.30440 4.46817 4.68292 4.83749 4.83829 4.98586 5.02285 5.06796 5.23008 5.37494 5.47930 5.76249 6.07090 6.34756 6.52760 6.99395 8.03667 8.27013 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.040715 B = 0.009963 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.550373 B = 2809.832865 C = 3311.622208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 C -0.126 4.126 4 C 0.174 3.826 5 N -0.581 5.581 6 C 0.350 3.650 7 C -0.418 4.418 8 H 0.097 0.903 9 C 0.021 3.979 10 N -0.742 5.742 11 Si 1.004 2.996 12 H -0.253 1.253 13 H -0.261 1.261 14 H -0.261 1.261 15 N -0.523 5.523 16 C 0.131 3.869 17 C -0.186 4.186 18 F -0.151 7.151 19 H 0.049 0.951 20 H 0.040 0.960 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.288 0.712 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 2.989 -4.037 5.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.065 4.065 3 C -0.184 4.184 4 C 0.019 3.981 5 N -0.300 5.300 6 C 0.114 3.886 7 C -0.453 4.453 8 H 0.115 0.885 9 C -0.203 4.203 10 N -0.363 5.363 11 Si 0.822 3.178 12 H -0.176 1.176 13 H -0.185 1.185 14 H -0.185 1.185 15 N -0.240 5.240 16 C -0.043 4.043 17 C -0.215 4.215 18 F -0.131 7.131 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.109 0.891 22 H 0.107 0.893 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.241 3.182 -2.948 4.883 hybrid contribution 0.482 -0.685 -0.396 0.926 sum -1.759 2.498 -3.344 4.530 Atomic orbital electron populations 1.21657 0.92578 1.01356 1.02815 1.20140 0.97543 0.96771 0.92020 1.21656 1.00077 0.93859 1.02814 1.21969 0.90588 0.90279 0.95218 1.68519 1.29120 1.34750 0.97644 1.20423 0.88426 0.86935 0.92767 1.19804 1.26364 1.10915 0.88191 0.88483 1.27156 0.93293 0.94265 1.05597 1.70179 1.20132 1.13383 1.32650 0.84836 0.79330 0.79428 0.74201 1.17608 1.18538 1.18546 1.69385 1.16871 1.14119 1.23653 1.23551 0.95146 0.98094 0.87534 1.19078 1.16174 1.04655 0.81609 1.91273 1.92253 1.88050 1.41509 0.93180 0.94041 0.89138 0.89339 0.94032 0.89143 0.93180 0.90059 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 9.10 71.98 0.66 -3.33 15 2 C -0.05 -1.63 3.18 -11.54 -0.04 -1.67 15 3 C -0.13 -3.99 9.10 71.98 0.66 -3.33 15 4 C 0.17 8.12 5.49 42.83 0.24 8.36 15 5 N -0.58 -30.50 9.92 -181.87 -1.80 -32.30 15 6 C 0.35 19.91 7.36 135.10 0.99 20.91 15 7 C -0.42 -22.74 9.37 23.51 0.22 -22.52 15 8 H 0.10 5.05 7.85 -2.90 -0.02 5.02 15 9 C 0.02 1.04 5.50 85.30 0.47 1.51 15 10 N -0.74 -38.53 11.42 21.84 0.25 -38.28 15 11 Si 1.00 36.39 29.56 68.60 2.03 38.42 15 12 H -0.25 -8.90 7.11 99.48 0.71 -8.19 15 13 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 14 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 15 N -0.52 -29.48 7.86 -193.75 -1.52 -31.00 15 16 C 0.13 6.56 11.31 84.98 0.96 7.52 15 17 C -0.19 -8.86 7.36 22.83 0.17 -8.69 15 18 F -0.15 -6.50 16.33 44.97 0.73 -5.77 15 19 H 0.05 1.74 8.06 -2.39 -0.02 1.72 15 20 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.09 2.14 8.14 -2.38 -0.02 2.12 15 22 H 0.09 2.95 7.22 -2.39 -0.02 2.93 15 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.09 2.13 8.14 -2.39 -0.02 2.12 15 25 H 0.05 1.74 8.06 -2.39 -0.02 1.72 15 26 H 0.29 13.23 8.29 -92.71 -0.77 12.46 15 27 H 0.16 6.97 8.06 -2.91 -0.02 6.95 15 Total: -1.00 -62.44 244.30 5.18 -57.26 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.17 Total: 12.91 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.32 Total: -1.23 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.08 Total: -101.59 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.73 Total: -5.77 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -62.44 5.18 -57.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261092729.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.480 kcal (2) G-P(sol) polarization free energy of solvation -62.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds