Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47682 * 2 1 4 4 C 1.50701 * 109.47497 * 239.99817 * 2 1 3 5 5 H 1.07997 * 120.00418 * 275.00593 * 4 2 1 6 6 C 1.37884 * 119.99946 * 95.00048 * 4 2 1 7 7 N 1.31508 * 120.00116 * 184.91797 * 6 4 2 8 8 Si 1.86803 * 119.99715 * 4.92021 * 6 4 2 9 9 H 1.48501 * 109.47288 * 84.83277 * 8 6 4 10 10 H 1.48499 * 109.47265 * 204.83281 * 8 6 4 11 11 H 1.48500 * 109.47362 * 324.83413 * 8 6 4 12 12 N 1.46509 * 109.47258 * 120.00164 * 2 1 3 13 13 C 1.39131 * 119.99830 * 275.00061 * 12 2 1 14 14 C 1.39111 * 119.68365 * 0.02562 * 13 12 2 15 15 C 1.38307 * 119.12677 * 179.97438 * 14 13 12 16 16 C 1.39043 * 118.48318 * 0.27042 * 15 14 13 17 17 F 1.35105 * 120.35900 * 179.70353 * 16 15 14 18 18 C 1.38212 * 119.28199 * 359.43619 * 16 15 14 19 19 N 1.32001 * 120.82032 * 0.57549 * 18 16 15 20 20 H 1.08992 * 109.47414 * 295.02182 * 1 2 3 21 21 H 1.08997 * 109.46735 * 55.02357 * 1 2 3 22 22 H 1.08997 * 109.47052 * 175.01913 * 1 2 3 23 23 H 0.97001 * 119.99707 * 179.97438 * 7 6 4 24 24 H 0.97003 * 120.00038 * 94.99915 * 12 2 1 25 25 H 1.08003 * 120.43080 * 359.97352 * 14 13 12 26 26 H 1.07999 * 120.75885 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.59043 * 180.29625 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3581 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3173 9 1 3.5992 2.3949 -1.7821 10 1 2.1059 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6907 1.1962 13 6 2.1512 0.0034 2.3947 14 6 1.8179 1.3529 2.4499 15 6 1.9539 2.0315 3.6473 16 6 2.4267 1.3352 4.7541 17 9 2.5799 1.9622 5.9410 18 6 2.7330 -0.0067 4.6283 19 7 2.5925 -0.6269 3.4716 20 1 -0.3634 0.4346 0.9311 21 1 -0.3633 0.5891 -0.8420 22 1 -0.3633 -1.0238 -0.0892 23 1 2.9364 -0.1048 -4.2555 24 1 2.2491 -1.6319 1.1526 25 1 1.4577 1.8638 1.5692 26 1 1.7032 3.0795 3.7198 27 1 3.0960 -0.5535 5.4861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109802.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = -11.467930 kcal Electronic energy + Delta-G solvation = -13332.781058 eV Core-core repulsion = 10811.988925 eV Total energy + Delta-G solvation = -2520.792133 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.47637 -39.73718 -36.03635 -32.73191 -32.12160 -30.47754 -27.88797 -25.43601 -23.68042 -22.45151 -20.29034 -18.09416 -17.13065 -16.68448 -16.34686 -15.38367 -14.98919 -14.32064 -13.84413 -13.59542 -13.25189 -12.96120 -12.61616 -12.51067 -12.12040 -11.79571 -11.22524 -10.93988 -10.70722 -10.01935 -9.65935 -9.46865 -9.41927 -9.17735 -8.79689 -7.02964 -6.34491 -4.39004 1.44946 1.60283 3.11573 3.18791 3.21757 3.80427 4.11762 4.17556 4.56845 4.89453 4.99057 5.05880 5.33590 5.61987 5.94317 6.03188 6.14828 6.31082 6.34490 6.46494 6.61209 6.94904 7.08345 7.28980 7.58999 8.04101 8.42238 8.56996 8.71091 9.24902 10.77576 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.008292 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.294266 B = 3376.035640 C = 3614.006993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.237 3.763 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.081 0.919 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.262 1.262 12 N -0.688 5.688 13 C 0.406 3.594 14 C -0.222 4.222 15 C -0.063 4.063 16 C -0.052 4.052 17 F -0.148 7.148 18 C 0.132 3.868 19 N -0.536 5.536 20 H 0.028 0.972 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.269 0.731 24 H 0.402 0.598 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 4.893 11.121 12.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.187 1.187 12 N -0.314 5.314 13 C 0.167 3.833 14 C -0.248 4.248 15 C -0.089 4.089 16 C -0.077 4.077 17 F -0.127 7.127 18 C -0.029 4.029 19 N -0.254 5.254 20 H 0.047 0.953 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.237 0.763 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.899 4.142 10.612 11.549 hybrid contribution -0.051 1.634 0.088 1.637 sum -1.950 5.776 10.700 12.314 Atomic orbital electron populations 1.22353 0.98451 1.01445 0.99145 1.19251 0.90901 0.93635 0.82838 0.93962 1.20948 1.45433 0.95904 0.94561 0.90093 1.24954 0.93633 0.98617 0.95145 1.69867 1.44154 1.36270 1.01707 0.86925 0.79424 0.85820 0.77868 1.19690 1.20869 1.18704 1.45733 1.66880 1.13130 1.05669 1.18773 0.88809 0.88790 0.86974 1.21419 1.09944 0.94388 0.99044 1.21274 0.95975 1.00277 0.91348 1.18297 1.13487 0.93264 0.82680 1.91420 1.94597 1.82541 1.44153 1.22385 0.95212 0.90041 0.95255 1.67323 1.20941 1.38615 0.98543 0.95277 0.92574 0.92828 0.92046 0.76269 0.84259 0.84517 0.82479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.39 37.16 0.35 -2.70 15 2 C 0.24 5.14 1.91 -69.08 -0.13 5.01 15 3 H 0.04 0.93 3.60 -51.93 -0.19 0.74 15 4 C -0.53 -13.70 9.05 -34.44 -0.31 -14.01 15 5 H 0.08 2.27 8.06 -52.49 -0.42 1.85 15 6 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 7 N -0.88 -25.27 13.96 55.43 0.77 -24.50 15 8 Si 0.87 19.81 26.99 -169.99 -4.59 15.22 15 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 11 H -0.26 -5.54 6.82 56.52 0.39 -5.15 15 12 N -0.69 -13.84 5.24 -55.04 -0.29 -14.13 15 13 C 0.41 7.64 7.63 -154.94 -1.18 6.46 15 14 C -0.22 -3.81 8.83 -39.23 -0.35 -4.15 15 15 C -0.06 -0.94 10.15 -39.26 -0.40 -1.34 15 16 C -0.05 -0.79 7.34 -39.29 -0.29 -1.08 15 17 F -0.15 -2.17 17.28 2.25 0.04 -2.13 15 18 C 0.13 2.02 11.16 -17.49 -0.20 1.82 15 19 N -0.54 -9.61 10.39 -12.37 -0.13 -9.74 15 20 H 0.03 0.51 7.77 -51.93 -0.40 0.11 15 21 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.05 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.40 7.98 8.72 -40.82 -0.36 7.62 15 25 H 0.14 2.36 6.18 -52.48 -0.32 2.04 15 26 H 0.14 1.67 8.06 -52.49 -0.42 1.24 15 27 H 0.16 1.91 8.06 -52.48 -0.42 1.49 15 LS Contribution 240.86 15.07 3.63 3.63 Total: -1.00 -27.51 240.86 -5.70 -33.21 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -2.54 Total: 6.35 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.60 Total: -7.91 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.36 Total: -48.36 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.59 Total: 15.22 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.51 -5.70 -33.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109802.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.743 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds