Wall clock time and date at job start Mon Mar 30 2020 02:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47682 * 2 1 4 4 C 1.50701 * 109.47497 * 239.99817 * 2 1 3 5 5 H 1.07997 * 120.00418 * 275.00593 * 4 2 1 6 6 C 1.37884 * 119.99946 * 95.00048 * 4 2 1 7 7 N 1.31508 * 120.00116 * 184.91797 * 6 4 2 8 8 Si 1.86803 * 119.99715 * 4.92021 * 6 4 2 9 9 H 1.48501 * 109.47288 * 84.83277 * 8 6 4 10 10 H 1.48499 * 109.47265 * 204.83281 * 8 6 4 11 11 H 1.48500 * 109.47362 * 324.83413 * 8 6 4 12 12 N 1.46509 * 109.47258 * 120.00164 * 2 1 3 13 13 C 1.39131 * 119.99830 * 275.00061 * 12 2 1 14 14 C 1.39111 * 119.68365 * 0.02562 * 13 12 2 15 15 C 1.38307 * 119.12677 * 179.97438 * 14 13 12 16 16 C 1.39043 * 118.48318 * 0.27042 * 15 14 13 17 17 F 1.35105 * 120.35900 * 179.70353 * 16 15 14 18 18 C 1.38212 * 119.28199 * 359.43619 * 16 15 14 19 19 N 1.32001 * 120.82032 * 0.57549 * 18 16 15 20 20 H 1.08992 * 109.47414 * 295.02182 * 1 2 3 21 21 H 1.08997 * 109.46735 * 55.02357 * 1 2 3 22 22 H 1.08997 * 109.47052 * 175.01913 * 1 2 3 23 23 H 0.97001 * 119.99707 * 179.97438 * 7 6 4 24 24 H 0.97003 * 120.00038 * 94.99915 * 12 2 1 25 25 H 1.08003 * 120.43080 * 359.97352 * 14 13 12 26 26 H 1.07999 * 120.75885 * 179.97438 * 15 14 13 27 27 H 1.08005 * 119.59043 * 180.29625 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3581 7 7 2.7061 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3173 9 1 3.5992 2.3949 -1.7821 10 1 2.1059 2.3992 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6907 1.1962 13 6 2.1512 0.0034 2.3947 14 6 1.8179 1.3529 2.4499 15 6 1.9539 2.0315 3.6473 16 6 2.4267 1.3352 4.7541 17 9 2.5799 1.9622 5.9410 18 6 2.7330 -0.0067 4.6283 19 7 2.5925 -0.6269 3.4716 20 1 -0.3634 0.4346 0.9311 21 1 -0.3633 0.5891 -0.8420 22 1 -0.3633 -1.0238 -0.0892 23 1 2.9364 -0.1048 -4.2555 24 1 2.2491 -1.6319 1.1526 25 1 1.4577 1.8638 1.5692 26 1 1.7032 3.0795 3.7198 27 1 3.0960 -0.5535 5.4861 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261109802.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:14 Heat of formation + Delta-G solvation = -28.858853 kcal Electronic energy + Delta-G solvation = -13333.535185 eV Core-core repulsion = 10811.988925 eV Total energy + Delta-G solvation = -2521.546260 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.66497 -41.06150 -37.61752 -34.60862 -33.41234 -32.06418 -29.28777 -27.31770 -24.95033 -23.85158 -21.91251 -19.75003 -18.39841 -18.18647 -17.83159 -16.70937 -16.56376 -15.74086 -15.34065 -14.97655 -14.78120 -14.36694 -14.19012 -14.08143 -13.41330 -13.32838 -12.95688 -12.70718 -12.32788 -11.84815 -11.28115 -11.00087 -10.86501 -10.71576 -10.48960 -8.44908 -8.37532 -6.46843 0.21117 0.33293 1.34726 1.36590 1.45734 2.28404 2.33946 2.81893 3.05038 3.34153 3.67393 3.89974 4.08377 4.27210 4.36128 4.71417 4.78009 4.83744 4.93634 5.02021 5.07811 5.43618 5.48887 5.68646 5.97848 6.26692 6.58529 6.84928 7.13992 7.25868 8.78313 Molecular weight = 210.09amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.008292 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.294266 B = 3376.035640 C = 3614.006993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.245 3.755 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.040 0.960 6 C 0.024 3.976 7 N -0.937 5.937 8 Si 0.934 3.066 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.231 1.231 12 N -0.702 5.702 13 C 0.387 3.613 14 C -0.233 4.233 15 C -0.053 4.053 16 C -0.045 4.045 17 F -0.141 7.141 18 C 0.128 3.872 19 N -0.553 5.553 20 H 0.052 0.948 21 H 0.057 0.943 22 H 0.045 0.955 23 H 0.271 0.729 24 H 0.397 0.603 25 H 0.143 0.857 26 H 0.170 0.830 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 7.149 13.173 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.142 3.858 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.575 5.575 8 Si 0.757 3.243 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.154 1.154 12 N -0.329 5.329 13 C 0.149 3.851 14 C -0.258 4.258 15 C -0.079 4.079 16 C -0.070 4.070 17 F -0.121 7.121 18 C -0.031 4.031 19 N -0.272 5.272 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.232 0.768 25 H 0.161 0.839 26 H 0.187 0.813 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.445 6.408 12.723 14.454 hybrid contribution 0.154 0.860 -0.375 0.951 sum -2.291 7.268 12.348 14.510 Atomic orbital electron populations 1.22244 0.96797 1.01337 1.00428 1.19033 0.91968 0.93138 0.81691 0.93478 1.21186 1.44952 0.94441 0.96615 0.94127 1.25833 0.93342 1.03840 0.94562 1.70016 1.46411 1.38380 1.02691 0.85944 0.80466 0.79522 0.78406 1.19425 1.20861 1.15416 1.45401 1.68499 1.12928 1.06069 1.18907 0.89948 0.89520 0.86690 1.21503 1.10533 0.93686 1.00105 1.21594 0.94359 1.01692 0.90211 1.18387 1.12433 0.93236 0.82933 1.91449 1.94450 1.82371 1.43785 1.22873 0.94480 0.90604 0.95180 1.67300 1.21293 1.39448 0.99140 0.92892 0.92395 0.93573 0.92031 0.76823 0.83920 0.81265 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 9.39 71.98 0.68 -4.96 15 2 C 0.25 10.48 1.91 44.24 0.08 10.56 15 3 H 0.05 1.97 3.60 -2.39 -0.01 1.96 15 4 C -0.53 -28.22 9.05 25.60 0.23 -27.99 15 5 H 0.04 2.40 8.06 -2.91 -0.02 2.38 15 6 C 0.02 1.31 5.47 84.66 0.46 1.77 15 7 N -0.94 -55.26 13.96 21.45 0.30 -54.96 15 8 Si 0.93 40.09 26.99 68.60 1.85 41.94 15 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 11 H -0.23 -8.70 6.82 99.48 0.68 -8.02 15 12 N -0.70 -28.04 5.24 -328.03 -1.72 -29.76 15 13 C 0.39 13.94 7.63 133.03 1.02 14.96 15 14 C -0.23 -7.29 8.83 22.50 0.20 -7.10 15 15 C -0.05 -1.37 10.15 22.48 0.23 -1.14 15 16 C -0.04 -1.20 7.34 22.46 0.16 -1.04 15 17 F -0.14 -3.59 17.28 44.97 0.78 -2.81 15 18 C 0.13 3.56 11.16 84.66 0.94 4.51 15 19 N -0.55 -18.90 10.39 -193.04 -2.01 -20.91 15 20 H 0.05 1.74 7.77 -2.39 -0.02 1.72 15 21 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 24 H 0.40 16.19 8.72 -92.71 -0.81 15.39 15 25 H 0.14 4.35 6.18 -2.91 -0.02 4.33 15 26 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 27 H 0.19 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -59.64 240.86 3.57 -56.07 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.36 Total: 20.86 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 4.01 Total: -10.42 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.43 Total: -105.63 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.85 Total: 41.94 kcal Total: -59.64 3.57 -56.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109802.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.210 kcal (2) G-P(sol) polarization free energy of solvation -59.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds