Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99928 * 2 1 4 4 C 1.50693 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.32042 * 118.77237 * 270.02578 * 4 3 2 6 6 C 1.32024 * 121.25097 * 179.67713 * 5 4 3 7 7 C 1.40917 * 118.83345 * 0.56539 * 6 5 4 8 8 C 1.41169 * 121.08729 * 179.72024 * 7 6 5 9 9 H 1.08000 * 120.00515 * 203.86310 * 8 7 6 10 10 C 1.39964 * 119.99632 * 23.85927 * 8 7 6 11 11 N 1.30852 * 119.99844 * 16.98458 * 10 8 7 12 12 Si 1.86802 * 119.99777 * 196.98397 * 10 8 7 13 13 H 1.48494 * 109.46989 * 265.18476 * 12 10 8 14 14 H 1.48497 * 109.47249 * 25.18861 * 12 10 8 15 15 H 1.48498 * 109.46673 * 145.18435 * 12 10 8 16 16 C 1.41873 * 117.83035 * 359.45188 * 7 6 5 17 17 O 1.35273 * 120.68316 * 180.25086 * 16 7 6 18 18 N 1.31874 * 118.76793 * 89.99788 * 4 3 2 19 19 H 1.09001 * 109.47255 * 300.00267 * 1 2 3 20 20 H 1.09000 * 109.47216 * 60.00316 * 1 2 3 21 21 H 1.08996 * 109.47461 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47263 * 59.99831 * 3 2 1 23 23 H 1.09002 * 109.47315 * 300.00130 * 3 2 1 24 24 H 1.07994 * 120.58382 * 180.28791 * 6 5 4 25 25 H 0.96998 * 119.99862 * 179.97438 * 11 10 8 26 26 H 0.96705 * 114.00148 * 89.99346 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.1455 1.1361 1.1583 6 6 5.4599 1.0257 1.2160 7 6 6.1909 0.9735 0.0124 8 6 7.5982 0.8616 0.0186 9 1 8.1706 1.1998 -0.8325 10 6 8.2516 0.3123 1.1278 11 7 7.5782 -0.3919 2.0012 12 14 10.0848 0.5846 1.3612 13 1 10.8324 -0.5652 0.7920 14 1 10.4923 1.8325 0.6669 15 1 10.3870 0.7032 2.8102 16 6 5.4661 1.0312 -1.2059 17 8 6.1093 0.9805 -2.3948 18 7 4.1456 1.1362 -1.1551 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 5.9662 0.9807 2.1688 25 1 8.0311 -0.7729 2.7697 26 1 6.2266 0.0851 -2.7407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132600.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -53.312128 kcal Electronic energy + Delta-G solvation = -13427.485344 eV Core-core repulsion = 10892.505921 eV Total energy + Delta-G solvation = -2534.979424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33950 -37.22322 -36.01460 -34.44414 -31.52089 -30.56786 -28.17408 -25.87651 -24.21904 -22.53422 -21.21665 -17.75346 -17.43600 -16.57339 -15.91602 -15.25909 -15.12974 -14.86107 -14.02480 -13.62420 -12.85145 -12.40062 -12.14406 -11.89469 -11.71615 -11.40594 -11.19939 -10.91519 -10.78448 -10.57832 -9.68287 -9.21287 -9.14761 -9.04556 -8.06331 -7.76864 -7.15021 -4.71865 2.29876 2.63589 2.90699 2.93156 3.00209 3.67732 4.10199 4.55847 4.95059 5.40100 5.49727 5.59613 5.69298 5.85367 5.91206 5.97915 6.37615 6.58298 6.78657 6.80065 7.28268 7.56136 7.68692 8.01319 8.07544 8.33207 8.75756 8.79303 9.71319 9.76490 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.051776 B = 0.008437 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.659997 B = 3317.741787 C = 3693.386762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.161 3.839 4 C 0.163 3.837 5 N -0.490 5.490 6 C 0.080 3.920 7 C 0.013 3.987 8 C -0.415 4.415 9 H 0.095 0.905 10 C 0.069 3.931 11 N -0.774 5.774 12 Si 0.923 3.077 13 H -0.266 1.266 14 H -0.256 1.256 15 H -0.271 1.271 16 C 0.201 3.799 17 O -0.476 6.476 18 N -0.496 5.496 19 H 0.037 0.963 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.164 0.836 25 H 0.292 0.708 26 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 0.267 -0.359 2.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.083 3.917 4 C -0.098 4.098 5 N -0.205 5.205 6 C -0.093 4.093 7 C 0.004 3.996 8 C -0.444 4.444 9 H 0.113 0.887 10 C -0.152 4.152 11 N -0.398 5.398 12 Si 0.746 3.254 13 H -0.191 1.191 14 H -0.179 1.179 15 H -0.196 1.196 16 C 0.011 3.989 17 O -0.280 6.280 18 N -0.220 5.220 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.181 0.819 25 H 0.103 0.897 26 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.481 0.655 -0.150 3.545 hybrid contribution 1.557 -0.439 0.019 1.618 sum -1.924 0.215 -0.131 1.941 Atomic orbital electron populations 1.22651 0.82216 1.02043 0.99424 1.88009 1.18470 1.28666 1.95253 1.20583 0.87418 0.84056 0.99664 1.20986 0.94182 1.11335 0.83332 1.67531 1.11722 1.11493 1.29733 1.23307 0.87528 0.99919 0.98551 1.19345 0.95771 0.92379 0.92093 1.19618 0.91029 1.31932 1.01870 0.88724 1.26186 1.02365 0.92226 0.94434 1.69751 1.39465 1.20674 1.09903 0.86037 0.80223 0.80353 0.78814 1.19096 1.17938 1.19550 1.19217 0.85972 1.08572 0.85164 1.84621 1.76187 1.32019 1.35144 1.66849 1.10973 1.12248 1.31892 0.94476 0.94540 0.90260 0.92418 0.92675 0.81932 0.89705 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 15 2 O -0.39 -7.92 10.69 -35.23 -0.38 -8.30 15 3 C 0.16 3.33 6.35 36.00 0.23 3.56 15 4 C 0.16 4.16 7.27 -156.92 -1.14 3.02 15 5 N -0.49 -12.92 10.29 -10.14 -0.10 -13.02 15 6 C 0.08 2.12 10.00 -16.46 -0.16 1.96 15 7 C 0.01 0.33 5.61 -106.38 -0.60 -0.26 15 8 C -0.42 -10.35 8.80 -37.82 -0.33 -10.69 15 9 H 0.09 2.28 7.72 -52.49 -0.41 1.88 15 10 C 0.07 1.59 5.20 -17.32 -0.09 1.50 15 11 N -0.77 -18.42 10.93 55.55 0.61 -17.81 15 12 Si 0.92 17.02 29.59 -169.99 -5.03 11.99 15 13 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 14 H -0.26 -4.74 7.11 56.52 0.40 -4.33 15 15 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 16 C 0.20 5.26 7.88 -15.85 -0.12 5.13 15 17 O -0.48 -11.02 12.98 -17.51 -0.23 -11.25 15 18 N -0.50 -13.06 10.33 -10.18 -0.11 -13.16 15 19 H 0.04 0.47 8.14 -51.93 -0.42 0.04 15 20 H 0.04 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.16 4.24 6.21 -52.49 -0.33 3.92 15 25 H 0.29 6.19 8.30 -40.82 -0.34 5.85 15 26 H 0.37 6.92 9.06 45.56 0.41 7.33 15 LS Contribution 240.24 15.07 3.62 3.62 Total: -1.00 -30.14 240.24 -4.29 -34.43 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -1.57 Total: 7.69 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.11 Total: 5.82 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.40 Total: -44.00 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.60 Total: -19.55 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.14 -4.29 -34.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132600.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.881 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds