Wall clock time and date at job start Mon Mar 30 2020 02:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99928 * 2 1 4 4 C 1.50693 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.32042 * 118.77237 * 270.02578 * 4 3 2 6 6 C 1.32024 * 121.25097 * 179.67713 * 5 4 3 7 7 C 1.40917 * 118.83345 * 0.56539 * 6 5 4 8 8 C 1.41169 * 121.08729 * 179.72024 * 7 6 5 9 9 H 1.08000 * 120.00515 * 203.86310 * 8 7 6 10 10 C 1.39964 * 119.99632 * 23.85927 * 8 7 6 11 11 N 1.30852 * 119.99844 * 16.98458 * 10 8 7 12 12 Si 1.86802 * 119.99777 * 196.98397 * 10 8 7 13 13 H 1.48494 * 109.46989 * 265.18476 * 12 10 8 14 14 H 1.48497 * 109.47249 * 25.18861 * 12 10 8 15 15 H 1.48498 * 109.46673 * 145.18435 * 12 10 8 16 16 C 1.41873 * 117.83035 * 359.45188 * 7 6 5 17 17 O 1.35273 * 120.68316 * 180.25086 * 16 7 6 18 18 N 1.31874 * 118.76793 * 89.99788 * 4 3 2 19 19 H 1.09001 * 109.47255 * 300.00267 * 1 2 3 20 20 H 1.09000 * 109.47216 * 60.00316 * 1 2 3 21 21 H 1.08996 * 109.47461 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47263 * 59.99831 * 3 2 1 23 23 H 1.09002 * 109.47315 * 300.00130 * 3 2 1 24 24 H 1.07994 * 120.58382 * 180.28791 * 6 5 4 25 25 H 0.96998 * 119.99862 * 179.97438 * 11 10 8 26 26 H 0.96705 * 114.00148 * 89.99346 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5124 1.1865 0.0006 5 7 4.1455 1.1361 1.1583 6 6 5.4599 1.0257 1.2160 7 6 6.1909 0.9735 0.0124 8 6 7.5982 0.8616 0.0186 9 1 8.1706 1.1998 -0.8325 10 6 8.2516 0.3123 1.1278 11 7 7.5782 -0.3919 2.0012 12 14 10.0848 0.5846 1.3612 13 1 10.8324 -0.5652 0.7920 14 1 10.4923 1.8325 0.6669 15 1 10.3870 0.7032 2.8102 16 6 5.4661 1.0312 -1.2059 17 8 6.1093 0.9805 -2.3948 18 7 4.1456 1.1362 -1.1551 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.6886 1.8464 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 5.9662 0.9807 2.1688 25 1 8.0311 -0.7729 2.7697 26 1 6.2266 0.0851 -2.7407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261132600.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:16 Heat of formation + Delta-G solvation = -78.221180 kcal Electronic energy + Delta-G solvation = -13428.565482 eV Core-core repulsion = 10892.505921 eV Total energy + Delta-G solvation = -2536.059561 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25257 -38.75281 -37.83527 -36.28590 -33.46412 -32.42908 -29.83527 -27.29543 -25.91182 -24.50473 -23.07767 -19.64336 -19.28630 -18.45097 -17.39239 -16.95576 -16.84669 -16.30546 -15.69163 -15.33966 -14.68390 -14.26433 -13.87333 -13.34429 -13.21685 -13.13192 -12.85450 -12.58693 -12.25618 -12.09212 -11.40447 -11.07541 -11.03230 -10.60299 -10.00866 -9.75002 -8.93230 -6.63516 0.43159 0.64622 1.39577 1.48168 1.58103 2.13362 2.42420 2.84478 3.22746 3.53066 3.82192 4.09945 4.32263 4.53212 4.59579 4.65063 4.74170 4.84394 4.86215 4.99610 5.40698 5.65022 6.10981 6.16286 6.29816 6.45795 6.79054 6.99661 7.74409 8.02543 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.051776 B = 0.008437 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.659997 B = 3317.741787 C = 3693.386762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.167 3.833 4 C 0.142 3.858 5 N -0.501 5.501 6 C 0.060 3.940 7 C -0.013 4.013 8 C -0.430 4.430 9 H 0.098 0.902 10 C 0.035 3.965 11 N -0.798 5.798 12 Si 1.001 2.999 13 H -0.257 1.257 14 H -0.256 1.256 15 H -0.260 1.260 16 C 0.185 3.815 17 O -0.477 6.477 18 N -0.508 5.508 19 H 0.054 0.946 20 H 0.054 0.946 21 H 0.097 0.903 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.160 0.840 25 H 0.305 0.695 26 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 0.154 -0.212 1.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.120 4.120 5 N -0.215 5.215 6 C -0.113 4.113 7 C -0.021 4.021 8 C -0.458 4.458 9 H 0.116 0.884 10 C -0.185 4.185 11 N -0.421 5.421 12 Si 0.819 3.181 13 H -0.181 1.181 14 H -0.179 1.179 15 H -0.184 1.184 16 C -0.006 4.006 17 O -0.283 6.283 18 N -0.232 5.232 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.115 0.885 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.177 0.823 25 H 0.116 0.884 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.892 0.523 -0.008 2.939 hybrid contribution 1.336 -0.475 -0.031 1.418 sum -1.557 0.048 -0.039 1.558 Atomic orbital electron populations 1.22953 0.79004 1.03843 1.01142 1.87932 1.21954 1.28453 1.95578 1.20577 0.84732 0.84676 1.01117 1.21900 0.96370 1.10858 0.82860 1.67556 1.11692 1.11877 1.30414 1.23315 0.87993 1.01332 0.98640 1.19628 0.96815 0.93397 0.92280 1.19890 0.90644 1.32170 1.03111 0.88410 1.27112 1.07131 0.91011 0.93230 1.69766 1.41787 1.20282 1.10257 0.84892 0.73700 0.80273 0.79209 1.18087 1.17948 1.18372 1.19464 0.86313 1.08897 0.85909 1.84546 1.75870 1.33759 1.34108 1.66960 1.11076 1.12814 1.32346 0.92736 0.92760 0.88504 0.90852 0.91176 0.82271 0.88382 0.75087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 15 2 O -0.42 -16.83 10.69 -148.98 -1.59 -18.42 15 3 C 0.17 6.79 6.35 71.23 0.45 7.24 15 4 C 0.14 7.27 7.27 138.65 1.01 8.28 15 5 N -0.50 -26.80 10.29 -185.99 -1.91 -28.71 15 6 C 0.06 3.24 10.00 85.32 0.85 4.10 15 7 C -0.01 -0.69 5.61 -21.00 -0.12 -0.81 15 8 C -0.43 -21.40 8.80 23.41 0.21 -21.19 15 9 H 0.10 4.68 7.72 -2.91 -0.02 4.66 15 10 C 0.03 1.57 5.20 85.26 0.44 2.01 15 11 N -0.80 -37.53 10.93 21.83 0.24 -37.29 15 12 Si 1.00 33.42 29.59 68.60 2.03 35.45 15 13 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 14 H -0.26 -8.52 7.11 99.48 0.71 -7.81 15 15 H -0.26 -8.18 7.11 99.48 0.71 -7.47 15 16 C 0.18 9.78 7.88 85.48 0.67 10.45 15 17 O -0.48 -22.03 12.98 -85.58 -1.11 -23.14 15 18 N -0.51 -26.96 10.33 -299.04 -3.09 -30.05 15 19 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 24 H 0.16 8.52 6.21 -2.91 -0.02 8.50 15 25 H 0.30 12.59 8.30 -92.71 -0.77 11.82 15 26 H 0.39 14.42 9.06 -74.05 -0.67 13.75 15 Total: -1.00 -64.23 240.24 -0.13 -64.36 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.54 Total: 25.79 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 4.77 Total: 12.02 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.76 Total: -96.04 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.70 Total: -41.56 kcal Atomic # 14 Polarization: 33.42 SS G_CDS: 2.03 Total: 35.45 kcal Total: -64.23 -0.13 -64.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132600.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.866 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds