Wall clock time and date at job start Mon Mar 30 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48491 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47161 * 299.99830 * 3 2 1 6 6 H 1.48505 * 109.46977 * 59.99459 * 3 2 1 7 7 C 1.37872 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00260 * 184.90037 * 7 2 1 9 9 C 1.50705 * 119.99755 * 4.90583 * 7 2 1 10 10 F 1.39899 * 109.70626 * 325.20468 * 9 7 2 11 11 C 1.53398 * 109.68148 * 85.74428 * 9 7 2 12 12 C 1.53124 * 109.41385 * 169.29621 * 11 9 7 13 13 C 1.53343 * 109.53549 * 290.00558 * 12 11 9 14 14 C 1.50931 * 108.42463 * 50.04349 * 13 12 11 15 15 O 1.33832 * 127.79811 * 163.26357 * 14 13 12 16 16 C 1.34516 * 109.41657 * 180.02562 * 15 14 13 17 17 C 1.34767 * 108.48662 * 359.96429 * 16 15 14 18 18 C 1.34885 * 123.90045 * 343.28236 * 14 13 12 19 19 H 0.97003 * 119.99837 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.48352 * 289.27567 * 11 9 7 21 21 H 1.08993 * 109.48497 * 49.31363 * 11 9 7 22 22 H 1.08998 * 109.46395 * 50.02505 * 12 11 9 23 23 H 1.09006 * 109.46078 * 170.00355 * 12 11 9 24 24 H 1.08998 * 109.67464 * 169.78182 * 13 12 11 25 25 H 1.09003 * 109.66943 * 290.27443 * 13 12 11 26 26 H 1.07995 * 125.75939 * 180.23628 * 16 15 14 27 27 H 1.07999 * 126.68167 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0804 9 6 1.2552 -2.4968 -0.1105 10 9 0.0300 -2.3946 0.5571 11 6 1.0123 -2.8287 -1.5883 12 6 0.4954 -4.2650 -1.7090 13 6 1.6229 -5.2463 -1.3668 14 6 2.2405 -4.8249 -0.0557 15 8 3.0246 -5.5488 0.7519 16 6 3.3665 -4.8103 1.8230 17 6 2.7964 -3.5950 1.7037 18 6 2.0733 -3.6060 0.4973 19 1 -0.4850 0.8401 -0.0004 20 1 0.2732 -2.1407 -1.9988 21 1 1.9465 -2.7310 -2.1412 22 1 -0.3353 -4.4113 -1.0186 23 1 0.1556 -4.4442 -2.7292 24 1 1.2172 -6.2537 -1.2744 25 1 2.3783 -5.2256 -2.1524 26 1 3.9957 -5.1348 2.6385 27 1 2.8785 -2.7728 2.3992 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137570.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:59 Heat of formation + Delta-G solvation = -38.977762 kcal Electronic energy + Delta-G solvation = -14192.247403 eV Core-core repulsion = 11637.969603 eV Total energy + Delta-G solvation = -2554.277800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.47042 -41.84581 -35.85077 -32.78366 -31.97849 -28.98697 -28.17051 -25.07615 -22.09084 -21.36105 -20.48972 -17.96746 -16.84874 -16.32058 -15.39553 -14.66222 -14.43430 -13.67904 -13.56694 -13.23217 -12.80997 -12.18659 -12.05496 -11.68458 -11.28337 -11.01725 -10.90895 -10.55985 -10.46356 -10.22513 -10.06141 -9.34796 -8.96111 -8.59680 -8.55115 -7.60193 -6.01361 -4.19364 2.41792 3.26352 3.34290 3.38303 3.47208 3.60027 4.37532 5.18875 5.27544 5.48530 5.57452 5.77675 5.90007 5.93066 6.13390 6.31473 6.40084 6.57136 6.70125 6.73226 6.87719 7.03417 7.25984 7.46860 7.66051 7.85597 7.95608 8.16239 8.82760 9.50545 10.99373 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.038047 B = 0.012690 C = 0.010846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.761786 B = 2205.913264 C = 2581.068196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.306 3.694 10 F -0.203 7.203 11 C -0.128 4.128 12 C -0.121 4.121 13 C -0.027 4.027 14 C -0.036 4.036 15 O -0.183 6.183 16 C -0.082 4.082 17 C -0.168 4.168 18 C -0.165 4.165 19 H 0.261 0.739 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.194 0.806 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -7.420 -1.141 8.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.589 4.589 8 H 0.085 0.915 9 C 0.287 3.713 10 F -0.183 7.183 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.064 4.064 14 C -0.086 4.086 15 O -0.081 6.081 16 C -0.149 4.149 17 C -0.187 4.187 18 C -0.167 4.167 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.211 0.789 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.279 -7.582 -1.182 8.345 hybrid contribution 0.501 1.144 0.301 1.285 sum 3.780 -6.437 -0.881 7.517 Atomic orbital electron populations 1.70185 1.05799 1.26411 1.46953 1.25060 0.94844 0.99274 0.93861 0.86521 0.80249 0.83437 0.77741 1.19568 1.20732 1.20834 1.21325 0.93793 0.89461 1.54337 0.91511 1.16696 0.77817 0.90552 0.86242 1.92786 1.46118 1.97104 1.82338 1.22260 1.01210 0.93724 0.99412 1.21694 0.97043 0.96139 1.00969 1.20124 0.97305 0.99471 0.89477 1.22405 0.98946 0.91448 0.95797 1.83782 1.54180 1.41474 1.28628 1.23874 1.06672 0.92104 0.92218 1.21570 1.00256 0.97645 0.99209 1.21315 1.02936 0.95990 0.96417 0.92943 0.90848 0.91900 0.91517 0.91633 0.90969 0.90417 0.78896 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.13 11.84 55.43 0.66 -24.48 15 2 C 0.08 2.12 5.42 -17.82 -0.10 2.02 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.55 -15.37 7.90 -34.44 -0.27 -15.65 15 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 15 9 C 0.31 7.97 1.09 -92.75 -0.10 7.86 15 10 F -0.20 -5.92 14.64 2.25 0.03 -5.88 15 11 C -0.13 -2.89 4.98 -26.46 -0.13 -3.03 15 12 C -0.12 -2.22 5.88 -26.49 -0.16 -2.37 15 13 C -0.03 -0.45 6.30 -27.59 -0.17 -0.62 15 14 C -0.04 -0.74 7.22 -35.38 -0.26 -1.00 15 15 O -0.18 -3.54 10.65 6.37 0.07 -3.47 15 16 C -0.08 -1.47 12.10 29.50 0.36 -1.11 15 17 C -0.17 -3.58 10.49 -39.90 -0.42 -4.00 15 18 C -0.16 -3.88 5.17 -104.93 -0.54 -4.42 15 19 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 20 H 0.07 1.77 8.14 -51.93 -0.42 1.35 15 21 H 0.06 1.37 8.08 -51.93 -0.42 0.95 15 22 H 0.07 1.30 7.90 -51.93 -0.41 0.89 15 23 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.19 2.50 8.06 -52.49 -0.42 2.07 15 27 H 0.15 3.04 8.06 -52.49 -0.42 2.62 15 LS Contribution 235.32 15.07 3.55 3.55 Total: -1.00 -31.27 235.32 -5.42 -36.69 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -2.91 Total: -0.25 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -1.79 Total: -22.32 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.66 Total: -24.48 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: 0.07 Total: -3.47 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.03 Total: -5.88 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.27 -5.42 -36.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137570.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.288 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds