Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48498 * 109.47329 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.46950 * 120.00022 * 3 2 1 6 6 H 1.48499 * 109.46710 * 239.99698 * 3 2 1 7 7 C 1.37882 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99685 * 173.74503 * 7 2 1 9 9 C 1.50692 * 120.00028 * 353.73931 * 7 2 1 10 10 F 1.39892 * 109.68105 * 57.15721 * 9 7 2 11 11 C 1.53403 * 109.68437 * 296.63545 * 9 7 2 12 12 C 1.53197 * 109.39018 * 190.73081 * 11 9 7 13 13 C 1.53336 * 109.54929 * 69.96427 * 12 11 9 14 14 C 1.50926 * 108.42293 * 309.92457 * 13 12 11 15 15 O 1.33831 * 127.80015 * 196.80987 * 14 13 12 16 16 C 1.34517 * 109.41951 * 179.89961 * 15 14 13 17 17 C 1.34775 * 108.48415 * 0.04412 * 16 15 14 18 18 C 1.34892 * 123.90286 * 16.77754 * 14 13 12 19 19 H 0.97000 * 120.00167 * 178.24189 * 1 2 3 20 20 H 1.09002 * 109.48104 * 310.70227 * 11 9 7 21 21 H 1.08994 * 109.47763 * 70.72688 * 11 9 7 22 22 H 1.09004 * 109.46185 * 309.92984 * 12 11 9 23 23 H 1.09000 * 109.42870 * 189.97745 * 12 11 9 24 24 H 1.08994 * 109.67060 * 190.19025 * 13 12 11 25 25 H 1.09006 * 109.67196 * 69.66092 * 13 12 11 26 26 H 1.07999 * 125.76124 * 180.02562 * 16 15 14 27 27 H 1.08001 * 126.67945 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1014 9 6 1.2577 -2.4952 0.1434 10 9 0.3030 -2.6045 -0.8731 11 6 0.5645 -2.5455 1.5110 12 6 0.0360 -3.9615 1.7614 13 6 1.2141 -4.9158 1.9907 14 6 2.2102 -4.7209 0.8737 15 8 3.2065 -5.5377 0.5113 16 6 3.8651 -5.0038 -0.5330 17 6 3.2866 -3.8277 -0.8470 18 6 2.2247 -3.6472 0.0574 19 1 -0.4850 -0.8396 -0.0258 20 1 1.2789 -2.2809 2.2906 21 1 -0.2657 -1.8395 1.5238 22 1 -0.5373 -4.2935 0.8958 23 1 -0.6057 -3.9584 2.6425 24 1 0.8576 -5.9458 1.9890 25 1 1.6867 -4.6922 2.9472 26 1 4.7144 -5.4432 -1.0350 27 1 3.5809 -3.1551 -1.6391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137572.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = -67.750821 kcal Electronic energy + Delta-G solvation = -14247.803542 eV Core-core repulsion = 11692.278048 eV Total energy + Delta-G solvation = -2555.525494 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 210.080 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.14145 -43.51712 -37.73697 -34.96350 -33.79524 -30.51981 -29.87081 -26.84322 -23.86431 -23.12249 -22.29118 -19.84918 -19.47731 -18.07048 -17.14161 -16.48005 -15.89646 -15.74535 -15.30506 -15.28880 -14.92072 -14.02959 -13.76960 -13.52609 -13.29256 -12.96183 -12.67472 -12.60444 -12.11401 -11.96823 -11.89973 -11.39344 -10.75560 -10.64043 -10.38499 -9.24408 -8.63875 -6.50864 0.80486 1.50307 1.57355 1.69051 1.78669 2.03995 2.52397 3.10923 3.74064 3.87938 3.97212 4.05771 4.10337 4.34924 4.52466 4.59689 4.71187 4.87966 4.92920 4.98675 5.23268 5.25496 5.38267 5.53931 5.58763 5.87899 6.09300 6.23384 6.49678 7.35875 8.69045 Molecular weight = 210.08amu Principal moments of inertia in cm(-1) A = 0.037651 B = 0.012852 C = 0.010929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.494122 B = 2178.142968 C = 2561.343920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 1.115 2.885 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.639 4.639 8 H 0.051 0.949 9 C 0.270 3.730 10 F -0.253 7.253 11 C -0.128 4.128 12 C -0.114 4.114 13 C -0.025 4.025 14 C -0.026 4.026 15 O -0.174 6.174 16 C -0.041 4.041 17 C -0.216 4.216 18 C -0.210 4.210 19 H 0.270 0.730 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.251 0.749 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -9.039 3.744 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.676 4.676 8 H 0.069 0.931 9 C 0.252 3.748 10 F -0.234 7.234 11 C -0.167 4.167 12 C -0.151 4.151 13 C -0.061 4.061 14 C -0.077 4.077 15 O -0.070 6.070 16 C -0.107 4.107 17 C -0.235 4.235 18 C -0.212 4.212 19 H 0.081 0.919 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.124 0.876 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.267 0.733 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.717 -7.698 3.883 9.828 hybrid contribution 0.051 -1.135 -0.732 1.352 sum 4.768 -8.833 3.151 10.521 Atomic orbital electron populations 1.70820 1.07772 1.31568 1.45537 1.27325 0.96540 1.06257 0.91427 0.82978 0.74233 0.71218 0.77964 1.20465 1.19136 1.19938 1.22440 0.95029 0.92249 1.57927 0.93085 1.17266 0.82466 0.91997 0.83105 1.92669 1.68296 1.97304 1.65166 1.22137 1.00065 0.97457 0.97036 1.21660 0.97186 0.93348 1.02891 1.20320 0.90859 1.01882 0.93084 1.22867 0.93207 0.90178 1.01416 1.83843 1.36884 1.44228 1.42063 1.24732 1.00601 0.94705 0.90668 1.21686 0.98867 0.99775 1.03176 1.20947 1.01522 0.98271 1.00447 0.91856 0.91681 0.93013 0.92922 0.87606 0.87028 0.87776 0.73333 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.83 13.02 21.45 0.28 -56.55 15 2 C -0.01 -0.80 5.24 84.66 0.44 -0.36 15 3 Si 1.12 50.62 29.91 68.60 2.05 52.67 15 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.64 -37.30 8.07 25.60 0.21 -37.10 15 8 H 0.05 2.98 7.46 -2.91 -0.02 2.95 15 9 C 0.27 14.47 0.85 -12.17 -0.01 14.46 15 10 F -0.25 -14.98 14.89 44.97 0.67 -14.31 15 11 C -0.13 -6.01 4.61 30.80 0.14 -5.87 15 12 C -0.11 -3.99 5.88 30.77 0.18 -3.81 15 13 C -0.02 -0.76 6.30 30.03 0.19 -0.57 15 14 C -0.03 -1.02 7.22 24.99 0.18 -0.84 15 15 O -0.17 -6.06 10.65 -0.11 0.00 -6.06 15 16 C -0.04 -1.32 12.10 67.02 0.81 -0.50 15 17 C -0.22 -9.09 10.27 22.06 0.23 -8.86 15 18 C -0.21 -9.90 5.15 -20.06 -0.10 -10.00 15 19 H 0.27 16.93 4.89 -92.71 -0.45 16.47 15 20 H 0.06 3.00 8.08 -2.39 -0.02 2.98 15 21 H 0.05 2.65 6.24 -2.39 -0.01 2.63 15 22 H 0.05 1.98 7.91 -2.39 -0.02 1.96 15 23 H 0.11 2.93 8.14 -2.39 -0.02 2.91 15 24 H 0.11 2.63 8.14 -2.39 -0.02 2.61 15 25 H 0.10 2.72 8.14 -2.38 -0.02 2.70 15 26 H 0.25 4.99 8.06 -2.91 -0.02 4.97 15 27 H 0.14 5.78 8.06 -2.91 -0.02 5.76 15 Total: -1.00 -71.82 230.59 6.75 -65.06 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.49 Total: 12.62 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 2.27 Total: -53.45 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: 0.00 Total: -6.06 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.67 Total: -14.31 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -71.82 6.75 -65.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137572.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.688 kcal (2) G-P(sol) polarization free energy of solvation -71.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds